Escherichia coli SP-5 |
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Putative Escherichia coli SP-5 RM systems
Ref: Xu,A. et al. unpublished
REBASE ref # 27075
| Sequence length: | GenBank #: | |
| Chromosome: | 5,324,421 bp | PNYF00000000 (NZ_PNYF00000000) |
| Chromosome: | 278,259 bp | PNYF02000002 |
REBASE acronym: EcoSP5
Org_num: 30231
All begin CYD33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1935 | 428 aa hypothetical protein | |||
| 1940 | S | S.EcoSP46ORF3220P (100% identity) | S.EcoSP5ORF1945P | |
| 1945 | M | M.EcoSP46ORF3220P (100% identity) | TGHAYNNNNCTNC | M.EcoSP5ORF1945P |
| 1950 | 128 aa hypothetical protein | |||
| 2175 | endoribonuclease SymE | |||
| 2180 | S | S.EcoSP46ORF2980P (100% identity) | CAAYNNNNNNNNTGAG | S.EcoSP5ORF2185P |
| 2185 | M | M.SspS13ORF3945P (100% identity) | CAAYNNNNNNNNTGAG | M.EcoSP5ORF2185P |
| 2190 | R | EcosLF82ORF3455P (100% identity) | CAAYNNNNNNNNTGAG | EcoSP5ORF2185P |
| 2195 | DUF262 domain-containing protein | |||
| Chromosome | ||||
| 1935 | 428 aa hypothetical protein | |||
| 1940 | S | S.EcoSP46ORF3220P (100% identity) | S.EcoSP5ORF1945P | |
| 1945 | M | M.EcoSP46ORF3220P (100% identity) | TGHAYNNNNCTNC | M.EcoSP5ORF1945P |
| 1950 | 128 aa hypothetical protein | |||
| 2175 | endoribonuclease SymE | |||
| 2180 | S | S.EcoSP46ORF2980P (100% identity) | CAAYNNNNNNNNTGAG | S.EcoSP5ORF2185P |
| 2185 | M | M.SspS13ORF3945P (100% identity) | CAAYNNNNNNNNTGAG | M.EcoSP5ORF2185P |
| 2190 | R | EcosLF82ORF3455P (100% identity) | CAAYNNNNNNNNTGAG | EcoSP5ORF2185P |
| 2195 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28555 | M | DNA methylase | M.EcoSP5ORF28555P | |
| 27340 | R | SsoII (100% identity) | CCNGG | EcoSP5ORF27345P |
| 27345 | M | M.SsoII (99% identity) | CCNGG | M.EcoSP5ORF27345P |
| 27350 | 0 aa hypothetical protein | |||
| 28020 | 73 aa hypothetical protein | |||
| 28025 | M | DNA methylase | M.EcoSP5ORF28025P | |
| 26050 | 73 aa hypothetical protein | |||
| 26070 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoSP5ORF26070P |
| 26075 | TrmB family transcriptional regulator | |||
| 65 | phosphohydrolase | |||
| 70 | M | M.EcoSP46DcmP (100% identity) | CCWGG | M.EcoSP5DcmP |
| 75 | V | V.SflC32DcmP (74% identity) | V.EcoSP5DcmP | |
| 80 | EamA family transporter | |||
| 22505 | pseudogene | |||
| 22510 | R | Sso8033ORF3755P (99% identity) | EcoSP5ORF22515P | |
| 22515 | M | M.Sso8033ORF3755P (100% identity) | M.EcoSP5ORF22515P | |
| 22520 | 257 aa hypothetical protein | |||
| 19875 | Fis family transcriptional regulator | |||
| 19880 | M | M.EspP079ORF3959P (100% identity) | ATGCAT | M.EcoSP5ORF19880P |
| 19885 | DUF2556 domain-containing protein | |||
| 4525 | ribulose-phosphate 3-epimerase | |||
| 4530 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSP5DamP |
| 4535 | cell division protein DamX | |||
| 17895 | PerC family transcriptional regulator | |||
| 17900 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoSP5ORF17900P |
| 17905 | LexA family transcriptional regulator | |||
| 17935 | 67 aa hypothetical protein | |||
| 17940 | M | M.EcoR55ORF21235P (100% identity) | M.EcoSP5ORF17940P | |
| 17945 | lysis protein S | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1950 | 128 aa hypothetical protein | |||
| 1955 | R | EcoSP46McrCP (100% identity) | EcoSP5McrCP | |
| 1960 | R | EcoIAI39McrBP (100% identity) | EcoSP5McrBP | |
| 1965 | HNH endonuclease | |||
| Chromosome | ||||
| 1950 | 128 aa hypothetical protein | |||
| 1955 | R | EcoSP46McrCP (100% identity) | EcoSP5McrCP | |
| 1960 | R | EcoIAI39McrBP (100% identity) | EcoSP5McrBP | |
| 1965 | HNH endonuclease | |||