Escherichia coli SP-4 |
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Putative Escherichia coli SP-4 RM systems
Ref: Xu,A. et al. unpublished
REBASE ref # 27075
Contig set: 4,894,697 bp
GenBank #: PNYE00000000 (NZ_PNYE00000000)
REBASE acronym: EcoSP4
Org_num: 30230
All begin CX383_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 13080 | endoribonuclease SymE | |||
| 13085 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoSP4ORF13090P |
| 13090 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoSP4ORF13090P |
| 13095 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoSP4ORF13090P |
| 13100 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25090 | M | M.SenSL26ORF25460P (100% identity) | AAGCTT | M.EcoSP4ORF25090P |
| 25095 | plasmid replication initiation protein | |||
| 25100 | 59 aa hypothetical protein | |||
| 25105 | Rop family plasmid primer RNA-binding protein | |||
| 25110 | 74 aa hypothetical protein | |||
| 25115 | 97 aa hypothetical protein | |||
| 25120 | R | SenSL26ORF25460P (100% identity) | AAGCTT | EcoSP4ORF25090P |
| 19540 | 73 aa hypothetical protein | |||
| 19560 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSP4ORF19560P |
| 19565 | TrmB family transcriptional regulator | |||
| 75 | DUF2556 domain-containing protein | |||
| 80 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSP4ORF80P |
| 85 | Fis family transcriptional regulator | |||
| 9635 | 75 aa hypothetical protein | |||
| 9640 | M | M.Eco573ORF5620P (100% identity) | M.EcoSP4ORF9640P | |
| 9645 | 273 aa hypothetical protein | |||
| 4395 | phosphohydrolase | |||
| 4400 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoSP4DcmP |
| 4405 | V | V.SflC32DcmP (74% identity) | V.EcoSP4DcmP | |
| 4410 | drug/metabolite exporter YedA | |||
| 16570 | cell division protein DamX | |||
| 16575 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSP4DamP |
| 16580 | ribulose-phosphate 3-epimerase | |||
| 3600 | PerC family transcriptional regulator | |||
| 3605 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoSP4ORF3605P |
| 3610 | LexA family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13095 | type I restriction-modification system | |||
| 13100 | R | EcosS1MrrP (100% identity) | EcoSP4MrrP | |
| 13105 | GTPase | |||
| 3805 | 41 aa hypothetical protein | |||
| 3810 | R | EspFAAGmrSDP (100% identity) | EcoSP4GmrSDP | |
| 3815 | damage-inducible protein DinI | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21665 | recombination protein NinB | |||
| 21670 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoSP4ORF21670P |
| 21675 | NinE family protein | |||