Deinococcus wulumuqiensis NEB 479 |
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Putative Deinococcus wulumuqiensis NEB 479 RM systems
Ref: Fomenkov,A. et al. unpublished
REBASE ref # 9259
| Sequence length: | GenBank #: | |
| Chromosome: | 2,658,929 bp | CP031158 |
| plasmid pDrdI: | 668,667 bp | CP031163 |
| plasmid pDrdIV: | 31,268 bp | CP031162 |
| plasmid pDrdVI: | 15,514 bp | CP031164 |
REBASE acronym: Drd
Org_num: 1116
All begin DVJ83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9825 | M48 family peptidase | |||
| 9830 | R | DxiR13ORFHP (97% identity) | GNGAYNNNNNCTC | DrdIXP |
| 9835 | 37 aa hypothetical protein | |||
| 9840 | S | S.KoxSA2ORFGP (35% identity) | GNGAYNNNNNCTC | S.DrdIX |
| 9845 | Abi family protein | |||
| 9850 | M | M.DxiR13ORFHP (94% identity) | GNGAYNNNNNCTC | M.DrdIX |
| 9860 | bifunctional demethylmenaquinone | |||
| plasmid pDrdI | ||||
| 16325 | 204 aa hypothetical protein | |||
| 16330 | M | M.Lsp112ORFEP (59% identity) | M.DrdORFCP | |
| 16335 | S | S.VcoRE22ORF15740P (19% identity) | S.DrdORFCP | |
| 16340 | IS1595 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12115 | IS4 family transposase | |||
| 12125 | RM | DxiR13ORFKP (56% identity) | CATGNAC | DrdV |
| 12130 | 160 aa hypothetical protein | |||
| plasmid pDrdI | ||||
| 15670 | AAA family ATPase | |||
| 15675 | M | M.DspQL22ORF910P (64% identity) | YCGCGR | M.DrdVII |
| 15685 | DNA helicase | |||
| 16400 | helix-turn-helix domain-containing protein | |||
| ??? | M | M.GbeBORF2995P (16% identity) | GACNNNNNNGTC | M.DrdI |
| 16415 | IS4 family transposase | |||
| 16420 | IS4 family transposase | |||
| 16425 | R | 396 aa hypothetical protein | GACNNNNNNGTC | DrdI |
| 16430 | IS66 family transposase | |||
| plasmid pDrdIV | ||||
| 15255 | 187 aa hypothetical protein | |||
| 15260 | RM | DspUR1ORF1590P (57% identity) | TACGAC | DrdIV |
| 15265 | 65 aa hypothetical protein | |||
| plasmid pDrdVI | ||||
| 18880 | 82 aa hypothetical protein | |||
| 18885 | M | M1.Rsp1099ORF8545P (76% identity) | GCAGCC | M1.DrdVI |
| 18890 | M | M.Nsp79ORF3460P (73% identity) | GCAGCC | M2.DrdVI |
| 18895 | RM | Rsp52915ORF17850P (80% identity) | GCAGCC | DrdVI |
| 18900 | KTSC domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1280 | IS4 family transposase | |||
| 1285 | R | DxiR13McrCP (99% identity) | DrdMcrCP | |
| 1290 | R | DxiR13McrBP (43% identity) | DrdMcrBP | |
| 1295 | Type II restriction endonuclease and | |||