Escherichia coli CFSAN064035 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli CFSAN064035 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 27242
| Sequence length: | GenBank #: | |
| Chromosome: | 4,923,235 bp | CP031134 |
| plasmid pGMI17-003_1: | 310,064 bp | CP031135 |
| plasmid pGMI17-003_2: | 109,442 bp | CP031136 |
| plasmid pGMI17-003_3: | 77,958 bp | CP031137 |
REBASE acronym: Eco64035
Org_num: 30073
All begin C6669_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pGMI17-003_3 | ||||
| 28510 | type II toxin-antitoxin system Phd/YefM family | |||
| ??? | M | M.Ecos2020ORFGP (100% identity) | CAAYNNNNNCTGG | M.Eco64035ORF28515P |
| 28520 | S | S.SenceORFJP (100% identity) | CAAYNNNNNCTGG | S.Eco64035ORF28515P |
| 28525 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNCTGG | Eco64035ORF28515P |
| 28530 | glycosyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 630 | NinE family protein | |||
| 635 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco64035ORF635P |
| 640 | recombination protein NinB | |||
| 3640 | LexA family transcriptional regulator | |||
| 3645 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.Eco64035ORF3645P |
| 3650 | PerC family transcriptional regulator | |||
| 11060 | cell division protein DamX | |||
| 11065 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco64035DamP |
| 11070 | ribulose-phosphate 3-epimerase | |||
| 11650 | DUF2556 domain-containing protein | |||
| 11655 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco64035ORF11655P |
| 11660 | Fis family transcriptional regulator | |||
| 15380 | PerC family transcriptional regulator | |||
| 15385 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco64035ORF15385P |
| 15390 | LexA family transcriptional regulator | |||
| 15420 | 67 aa hypothetical protein | |||
| 15425 | M | M.Sso63633ORF22290P (99% identity) | M.Eco64035ORF15425P | |
| 15430 | holin | |||
| 15565 | 257 aa hypothetical protein | |||
| 15570 | M | M.Sso8033ORF3755P (100% identity) | M.Eco64035ORF15570P | |
| 15575 | R | Sso8033ORF3755P (99% identity) | Eco64035ORF15570P | |
| 15580 | pseudogene | |||
| 17130 | recombination protein NinB | |||
| 17135 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco64035ORF17135P |
| 17140 | NinE family protein | |||
| 19315 | phosphohydrolase | |||
| 19320 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco64035DcmP |
| 19325 | V | V.SsoSE61DcmP (100% identity) | V.Eco64035DcmP | |
| 19330 | drug/metabolite exporter YedA | |||
| plasmid pGMI17-003_1 | ||||
| 25990 | 203 aa hypothetical protein | |||
| 25995 | M | M.SenF8025ORFAP (86% identity) | M.Eco64035ORF25995P | |
| 26000 | 102 aa hypothetical protein | |||
| 26500 | thermonuclease family protein | |||
| 26505 | M | M.SenZC055ORF26240P (100% identity) | M.Eco64035ORF26505P | |
| 26510 | 56 aa hypothetical protein | |||
| 27355 | 273 aa hypothetical protein | |||
| 27360 | M | M1.PspNIH2ORF20995P (100% identity) | M.Eco64035ORF27360P | |
| 27365 | DNA-binding protein | |||
| plasmid pGMI17-003_3 | ||||
| 28085 | 0 aa hypothetical protein | |||
| 28090 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco64035ORF28090P |
| 28095 | 73 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25410 | replication endonuclease | |||
| 25415 | M | M.EcoTCMB2ORF10935P (100% identity) | GATC | M.Eco64035ORF25415P |
| 25420 | TraR/DksA family transcriptional regulator | |||
| plasmid pGMI17-003_2 | ||||
| 27430 | 269 aa hypothetical protein | |||
| 27435 | M | M.Ecoppa6ORF24465P (100% identity) | M.Eco64035ORF27435P | |
| 27440 | 76 aa hypothetical protein | |||