Bacteroides fragilis ATCC 25285 |
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Putative Bacteroides fragilis ATCC 25285 RM systems
Ref: Cerdeno-Tarraga,A.M. et al. Science 307 (5714), 1463-1465 (2005)
REBASE ref # 8910
Complete sequence: 5,205,140 bp
GenBank #: CR626927 (NC_003228)
REBASE acronym: BfaS
Org_num: 898
All begin BF9343_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1026 | 419 aa conserved hypothetical protein | |||
| 1027 | C | C.Bfr9343DIIP (100% identity) | C.BfaSIVP | |
| 1028 | M | M.Bfr9343II (100% identity) | CNAGNNNNNNTGA | M.BfaSIV |
| 1029 | S | S.Bfr9343II (100% identity) | CNAGNNNNNNTGA | S.BfaSIV |
| 1030 | R | Bfr9343IIP (100% identity) | CNAGNNNNNNTGA | BfaSIVP |
| 1031 | 236 aa conserved hypothetical protein | |||
| 1380 | transmembrane protein | |||
| ??? | C | C.Bsp2737ORF11960P (100% identity) | C.BfaSORF1383P | |
| 1382 | R | Bfr14ORF3855P (100% identity) | BfaSORF1383P | |
| 1383 | M | M.Bsp2737ORF11960P (100% identity) | M.BfaSORF1383P | |
| 1384 | DNA-binding protein | |||
| 1385 | 148 aa hypothetical protein | |||
| 1386 | S | S.Bfr9343ORF3032P (100% identity) | S.BfaSORF1383P | |
| 1388 | transposase | |||
| 1460 | 133 aa hypothetical protein | |||
| 1461 | S | S.Bfr1512ORF18300P (100% identity) | S.BfaSORF1461P | |
| 1462 | phage integrase/recombinase | |||
| 1752 | 125 aa conserved hypothetical protein | |||
| ??? | C | C.Bfr9343IVP (100% identity) | C.BfaSIP | |
| 1754 | R | Bfr9343IVP (100% identity) | GACNNNNNNTCC | BfaSIP |
| 1755 | 551 aa conserved hypothetical protein | |||
| 1756 | M | M.Bfr9343IV (100% identity) | GACNNNNNNTCC | M.BfaSI |
| 1757 | S | S1.Bfr9343DIV (100% identity) | GACNNNNNNTCC | S1.BfaSI |
| 1758 | S | S4.Bfr9343IVP (54% identity) | S2.BfaSIP | |
| 1759 | S | S3.Bfr9343DIVP (98% identity) | S3.BfaSIP | |
| 1760 | S | S4.Bfr9343DIVP (100% identity) | S4.BfaSIP | |
| 1761 | phage integrase/recombinase | |||
| 3936 | 164 aa hypothetical protein | |||
| ??? | M | M.BfrGUT04ORFCP (73% identity) | M.BfaSORF3937P | |
| 3938 | TnpC transposase (pseudogene) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1189 | 224 aa hypothetical protein | |||
| 1190 | RM | Bfr9343III (100% identity) | GANGGAG | BfaSII |
| 1191 | 509 aa conserved hypothetical protein | |||
| 1428 | 80 aa hypothetical protein | |||
| 1429 | M | M.PmeBin12ORFDP (86% identity) | M.BfaSORF1429P | |
| 1430 | 53 aa hypothetical protein | |||
| 3327 | 128 aa hypothetical protein | |||
| 3328 | M | M.Bfr9343I (100% identity) | ATGCAT | M.BfaSIII |
| 3329 | R | Bfr9343IP (100% identity) | ATGCAT | BfaSIIIP |
| 3330 | 69 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1010 | ribosomal large subunit pseudouridine | |||
| 1011 | R | Bfr9ORF8795P (100% identity) | BfaSORF1012P | |
| 1012 | M | M.BfrFAAORFBP (99% identity) | M.BfaSORF1012P | |
| 1013 | glycosyl hydrolase | |||
| 1064 | 227 aa conserved hypothetical protein | |||
| 1065 | M | M.Bfr9343ORF2712P (100% identity) | M.BfaSORF1065P | |
| 1066 | DNA-binding protein | |||
| 1067 | R | Pvu201ORF19755P (100% identity) | BfaSORF1065P | |
| 1068 | ATP/GTP-binding protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2805 | 85 aa hypothetical protein | |||
| 2806 | R | Bfr1512GmrSDP (100% identity) | BfaSGmrSDP | |
| 2807 | 68 aa hypothetical protein | |||