Prevotella intermedia KCOM 2734 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Prevotella intermedia KCOM 2734 RM systems
Ref: Kook,J.-K. et al. unpublished
REBASE ref # 24621
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,072,008 bp | CP030094 |
| chromosome 2: | 877,055 bp | CP030095 |
REBASE acronym: Pin2734
Org_num: 29316
All begin CTM55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 9165 | 139 aa hypothetical protein | |||
| 9170 | S | S2.Pin14ORF445P (54% identity) | S4.Pin2734IIIP | |
| 9175 | integrase | |||
| 9180 | S | S3.PspF0043IP (56% identity) | AAGNNNNNTGG | S3.Pin2734III |
| 9185 | S | S3.Pin14ORF445P (91% identity) | S2.Pin2734IIIP | |
| 9190 | ATP-binding protein | |||
| 9195 | S | S1.PspF0043IP (98% identity) | S1.Pin2734IIIP | |
| 9200 | M | M.Pin14ORF445P (100% identity) | AAGNNNNNTGG | M.Pin2734III |
| 9205 | R | Pin14ORF445P (100% identity) | AAGNNNNNTGG | Pin2734IIIP |
| 9210 | XRE family transcriptional regulator | |||
| 9610 | nicotinamidase | |||
| 9615 | M | M.Pin2836ORF10700P (98% identity) | RTTAYNNNNRTTG | M.Pin2734I |
| 9620 | S | S.Pin2698ORF10290P (68% identity) | RTTAYNNNNRTTG | S.Pin2734I |
| 9625 | R | Pin14ORF436P (99% identity) | RTTAYNNNNRTTG | Pin2734IP |
| 9630 | DUF5117 domain-containing protein | |||
| 10300 | site-specific integrase | |||
| 10305 | S | S4.PinWW414ORF5835P (72% identity) | S4.Pin2734IIP | |
| 10310 | S | S4.Pin14ORF171P (48% identity) | S3.Pin2734IIP | |
| 10315 | S | S1.Pin14ORF171P (43% identity) | S2.Pin2734IIP | |
| 10320 | S | S1.Pin14ORF171P (55% identity) | GAGNNNNNRTTT | S1.Pin2734II |
| 10325 | transcriptional regulator | |||
| 10330 | DUF262 domain-containing protein | |||
| 10335 | M | M.Pin14ORF171P (100% identity) | GAGNNNNNRTTT | M.Pin2734II |
| 10340 | 215 aa hypothetical protein | |||
| 10345 | R | Pin14ORF171P (100% identity) | GAGNNNNNRTTT | Pin2734IIP |
| 10350 | XRE family transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 4430 | DNA repair protein RecO | |||
| 4435 | R | Pin14ORF1619P (100% identity) | GTYRAC | Pin2734IVP |
| 4440 | M | M.Pin14ORF1619P (100% identity) | GTYRAC | M.Pin2734IV |
| 4445 | NigD-like protein | |||
| 7260 | 134 aa hypothetical protein | |||
| 7265 | M | M.PinWW414ORF3170P (100% identity) | M.Pin2734ORF7265P | |
| 7270 | 170 aa hypothetical protein | |||
| 7275 | ATP-binding protein | |||
| 7280 | endonuclease | |||
| 7285 | PD-(D/E)XK motif protein | |||
| 7290 | 788 aa hypothetical protein | |||
| 7295 | 90 aa hypothetical protein | |||
| 7300 | V | V.PgiyORF5930P (76% identity) | V.Pin2734ORF7265P | |
| 7305 | DNA-binding protein | |||
| chromosome 2 | ||||
| 10015 | 628 aa hypothetical protein | |||
| 10020 | RM | Pin14ORF299P (100% identity) | GAAGAA | Pin2734V |
| 10025 | transcriptional regulator | |||