Pasteurellaceae bacterium 12565 |
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Putative Pasteurellaceae bacterium 12565 RM systems
Ref: Beker,M. et al. Front. Microbiol. (2018) In press
REBASE ref # 26794
Complete sequence: 2,630,016 bp
GenBank #: CP026856
REBASE acronym: Pba12565
Org_num: 29674
All begin C4O86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1930 | bifunctional glutamate--cysteine ligase | |||
| 1935 | S | S2.MhaPORFGP (88% identity) | S1.Pba12565ORF1955P | |
| 1940 | integrase | |||
| 1945 | S | S2.Mha63ORFNP (46% identity) | S2.Pba12565ORF1955P | |
| 1950 | transcriptional regulator | |||
| 1955 | M | M.Mhas183ORF2125P (100% identity) | M.Pba12565ORF1955P | |
| 1960 | R | Mhas184ORF1970P (100% identity) | Pba12565ORF1955P | |
| 1965 | phosphatidylserine decarboxylase | |||
| 4830 | bifunctional [glutamate--ammonia | |||
| 4835 | R | MhaGHORF13440P (100% identity) | Pba12565ORF4845P | |
| 4840 | S | S.PhaAI (100% identity) | S.Pba12565ORF4845P | |
| 4845 | M | M.Mhas183ORF4955P (89% identity) | M.Pba12565ORF4845P | |
| 4850 | 125 aa hypothetical protein | |||
| 10240 | restriction endonuclease subunit S | |||
| 10245 | S | S1.Mhas184ORF2820P (100% identity) | CAACNNNNNTC | S.Pba12565ORF10250P |
| 10250 | M | M.Mhas184ORF2820P (100% identity) | CAACNNNNNTC | M.Pba12565ORF10250P |
| 10255 | methionine synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3605 | 3-dehydroquinate synthase | |||
| 3610 | M | M.Mhas183ORF3810P (100% identity) | GATC | M.Pba12565ORF3610P |
| 3615 | sodium-dependent transporter | |||
| 4285 | 235 aa hypothetical protein | |||
| 4290 | M | M.Mhas183ORF4540P (100% identity) | M.Pba12565ORF4290P | |
| 4295 | 348 aa hypothetical protein | |||
| 4965 | replication protein | |||
| 4970 | M | M.Mhas183ORF5140P (100% identity) | M.Pba12565ORF4970P | |
| 4975 | DUF968 domain-containing protein | |||
| 6595 | DUF4224 domain-containing protein | |||
| 6600 | M | M.Mhas183ORF5005P (100% identity) | M.Pba12565ORF6600P | |
| 6605 | 280 aa hypothetical protein | |||
| 6600 | class I SAM-dependent methyltransferase | |||
| 6605 | M | M.Mhas183ORF5010P (100% identity) | M.Pba12565ORF6605P | |
| 6610 | Com family DNA-binding transcriptional | |||
| 7075 | 71 aa hypothetical protein | |||
| 7080 | M | M.Mhas183ORF7295P (100% identity) | M.Pba12565ORF7080P | |
| 7085 | DNA helicase | |||
| 8735 | protein-transmembrane prediction | |||
| 8740 | R | Mhas183ORF9065P (100% identity) | GCATC | Pba12565ORF8745P |
| 8745 | M | M.Mhas183ORF9065P (100% identity) | GCATC | M.Pba12565ORF8745P |
| 8750 | TIGR03752 family integrating conjugative element | |||
| 10365 | S6 family igA-specific metalloendopeptidase | |||
| 10370 | M | M.Mhas184ORF4105P (100% identity) | M.Pba12565ORF10370P | |
| 10375 | adhesin | |||
| 12110 | 188 aa hypothetical protein | |||
| 12115 | M | M.MhaPORFCP (100% identity) | CTGAAG | M.Pba12565ORF12115P |
| 12120 | RM | 0 aa hypothetical protein | Pba12565ORF12115P | |
| 12125 | helicase IV | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5505 | citrate synthase | |||
| 5510 | R | Mhas183ORF6680P (100% identity) | Pba12565ORF5515P | |
| ??? | M | M.MhaD174ORFAP (100% identity) | M.Pba12565ORF5515P | |
| 5525 | trimethylamine-N-oxide reductase TorA | |||
| 6745 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 6750 | R | Mhas183ORF5480P (100% identity) | GTTAAT | Pba12565ORF6755P |
| 6755 | M | M.Mhas184ORF7415P (100% identity) | GTTAAT | M.Pba12565ORF6755P |
| 6760 | 4-hydroxybenzoate octaprenyltransferase | |||