Mannheimia haemolytica 12540 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Mannheimia haemolytica 12540 RM systems
Ref: Beker,M. et al. Front. Microbiol. (2018) In press
REBASE ref # 26794
Complete sequence: 2,606,972 bp
GenBank #: CP026857
REBASE acronym: Mha12540
Org_num: 29678
All begin C4O89_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1895 | bifunctional glutamate--cysteine ligase | |||
| 1900 | S | restriction endonuclease subunit S | S2.Mha12540ORF1920P | |
| 1905 | integrase | |||
| 1910 | S | S1.Mhas183ORF2125P (100% identity) | GNGAYNNNNNNNRTTG | S1.Mha12540ORF1920P |
| 1915 | transcriptional regulator | |||
| 1920 | M | M.Pba12565ORF1955P (100% identity) | M.Mha12540ORF1920P | |
| 1925 | R | Pba12565ORF1955P (100% identity) | Mha12540ORF1920P | |
| 1930 | phosphatidylserine decarboxylase | |||
| 4580 | bifunctional [glutamate--ammonia | |||
| 4585 | R | Pba12565ORF4845P (100% identity) | Mha12540ORF4595P | |
| 4590 | S | S.PhaAI (100% identity) | S.Mha12540ORF4595P | |
| 4595 | M | M.Mhas183ORF4955P (91% identity) | M.Mha12540ORF4595P | |
| 4600 | GTPase-activating protein | |||
| 10085 | restriction endonuclease subunit S | |||
| 10090 | S | S.Pba12565ORF10250P (98% identity) | CAACNNNNNTC | S.Mha12540ORF10095P |
| 10095 | M | M.Pba12565ORF10250P (100% identity) | M.Mha12540ORF10095P | |
| 10100 | methionine synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3555 | 3-dehydroquinate synthase | |||
| 3560 | M | M.Pba12565ORF3610P (100% identity) | GATC | M.Mha12540ORF3560P |
| 3565 | sodium-dependent transporter | |||
| 4215 | site-specific integrase | |||
| 4220 | M | M.Pba12565ORF4290P (100% identity) | M.Mha12540ORF4220P | |
| 4225 | 348 aa hypothetical protein | |||
| 4650 | methyltransferase | |||
| 4655 | M | M.Pba12565ORF6605P (100% identity) | M.Mha12540ORF4655P | |
| 4660 | Com family DNA-binding transcriptional | |||
| 4760 | replication protein | |||
| 4765 | M | M.Pba12565ORF4970P (100% identity) | M.Mha12540ORF4765P | |
| 4770 | 0 aa hypothetical protein | |||
| 6740 | 71 aa hypothetical protein | |||
| 6745 | M | M.Pba12565ORF7080P (100% identity) | M.Mha12540ORF6745P | |
| 6750 | DNA helicase | |||
| 8650 | protein-transmembrane prediction | |||
| 8655 | R | Pba12565ORF8745P (100% identity) | Mha12540ORF8660P | |
| 8660 | M | M.Pba12565ORF8745P (87% identity) | M.Mha12540ORF8660P | |
| 8665 | TIGR03752 family integrating conjugative element | |||
| 11910 | 188 aa hypothetical protein | |||
| 11915 | M | M.Pba12565ORF12115P (74% identity) | M.Mha12540ORF11915P | |
| ??? | hypothetical protein | |||
| 11915 | SAM-dependent methyltransferase | |||
| ??? | RM | Mhas183ORF12540P (90% identity) | Mha12540ORF11920P | |
| 11935 | helicase IV | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5260 | citrate synthase | |||
| 5265 | R | Pba12565ORF5515P (100% identity) | Mha12540ORF5270P | |
| ??? | M | M.MhaPORFJP (100% identity) | M.Mha12540ORF5270P | |
| 5280 | trimethylamine-N-oxide reductase TorA | |||
| 6405 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 6410 | R | Pba12565ORF6755P (100% identity) | Mha12540ORF6415P | |
| 6415 | M | M.Pba12565ORF6755P (80% identity) | M.Mha12540ORF6415P | |
| 6420 | 4-hydroxybenzoate octaprenyltransferase | |||