Helicobacter cinaedi |
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Putative Helicobacter cinaedi RM systems
Ref: Chan,W.-S. et al. unpublished
REBASE ref # 26666
Complete sequence: 1,995,911 bp
GenBank #: CP029337
REBASE acronym: Hci60917
Org_num: 29202
All begin C6B36_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9630 | cation transporter | |||
| 9635 | S | S.Hci197ORF3840P (100% identity) | S.Hci60917ORF9650P | |
| 9640 | type II toxin-antitoxin system RelE/ParE family | |||
| 9645 | 94 aa hypothetical protein | |||
| 9650 | M | M.HciP01DORFHP (100% identity) | M.Hci60917ORF9650P | |
| 9655 | R | HciP01DORFHP (98% identity) | Hci60917ORF9650P | |
| 9660 | Crp/Fnr family transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | NAD(P)-dependent alcohol dehydrogenase | |||
| ??? | RM | HciORF28P (97% identity) | Hci60917ORF50P | |
| 60 | 256 aa hypothetical protein | |||
| 1770 | SAM-dependent methyltransferase | |||
| 1775 | M | M.HciP01DORFBP (99% identity) | M.Hci60917ORF1775P | |
| 1780 | 249 aa hypothetical protein | |||
| 2175 | iron-sulfur cluster assembly scaffold protein | |||
| 2180 | R | HciP01DORFZP (100% identity) | Hci60917ORF2185P | |
| 2185 | M | M.HciP01DORFZP (100% identity) | M.Hci60917ORF2185P | |
| 2190 | cysteine desulfurase, NifS family | |||
| 4700 | lipoprotein signal peptidase | |||
| 4705 | RM | HciP01DORFQP (16% identity) | Hci60917ORF4705AP | |
| 4710 | RM | Hci611ORF903P (69% identity) | Hci60917ORF4705BP | |
| 4715 | RM | HciP01DORFQP (46% identity) | Hci60917ORF4705CP | |
| 4725 | sodium:proton antiporter | |||
| 4835 | 100 aa hypothetical protein | |||
| 4840 | RM | HciP01DORFRP (95% identity) | Hci60917ORF4840P | |
| 4845 | arginyltransferase | |||
| 5340 | RDD family protein | |||
| 5345 | M | M.Hci197ORF10205P (100% identity) | M.Hci60917ORF5345P | |
| 5350 | DUF262 domain-containing protein | |||
| 5430 | glutamine-hydrolyzing GMP synthase | |||
| ??? | R | HciP01DORFTP (100% identity) | Hci60917ORF5440P | |
| ??? | M | M.HciP01DORFTP (100% identity) | M.Hci60917ORF5440P | |
| 5445 | SAM-dependent methyltransferase | |||
| ??? | DNA methyltransferase | |||
| 5445 | M | M.HciP01DORFSP (95% identity) | M.Hci60917ORF5445P | |
| 5450 | R | HciP01DORFSP (100% identity) | Hci60917ORF5445P | |
| 5455 | [cytidine(C)-cytidine(C)-adenosine (A)]-adding | |||
| 6055 | PLP-dependent transferase | |||
| 6060 | M | M.HciP01DORFYP (100% identity) | M.Hci60917ORF6060P | |
| ??? | R | HciP01DORFYP (100% identity) | Hci60917ORF6060P | |
| 6075 | cysteine synthase family protein | |||
| 6075 | cysteine synthase family protein | |||
| 6080 | M | M.HciP01DORFXP (100% identity) | M.Hci60917ORF6080P | |
| 6085 | R | HciP01DORFXP (100% identity) | Hci60917ORF6080P | |
| 6090 | 0 aa hypothetical protein | |||
| 6095 | 223 aa hypothetical protein | |||
| 6100 | M | M.HciP01DORFVP (94% identity) | M.Hci60917ORF6100P | |
| 6105 | site-specific DNA-methyltransferase | |||
| 6100 | DNA cytosine methyltransferase | |||
| 6105 | M | M.HciP01DORFUP (100% identity) | M.Hci60917ORF6105P | |
| 6110 | HNH endonuclease | |||
| 7400 | type II toxin-antitoxin system HicB family | |||
| 7405 | RM | HciP01DORFEP (100% identity) | Hci60917ORF7405P | |
| 7410 | NgoFVII family restriction endonuclease | |||
| 8115 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase | |||
| ??? | RM | HciP01DORFNP (84% identity) | Hci60917ORF8120P | |
| 8130 | 73 aa hypothetical protein | |||
| 8250 | paraslipin | |||
| 8255 | R | HciP01DORFLP (100% identity) | Hci60917ORF8260P | |
| 8260 | M | M1.HciP01DORFLP (100% identity) | M1.Hci60917ORF8260P | |
| 8265 | M | M2.HciP01DORFLP (100% identity) | M2.Hci60917ORF8260P | |
| 8270 | site-specific DNA-methyltransferase | |||
| 8270 | site-specific DNA-methyltransferase | |||
| 8275 | R | HciP01DORFMP (100% identity) | Hci60917ORF8285P | |
| 8280 | 359 aa hypothetical protein | |||
| 8285 | M | M.HciP01DORFMP (100% identity) | M.Hci60917ORF8285P | |
| 8290 | alanine--tRNA ligase | |||
| 8650 | 239 aa hypothetical protein | |||
| 8655 | M | M.HciORF2076P (100% identity) | M.Hci60917ORF8655P | |
| 8660 | R | HciP01DORFFP (100% identity) | Hci60917ORF8655P | |
| 8665 | 209 aa hypothetical protein | |||
| 9235 | cupin domain-containing protein | |||
| 9240 | M | M1.HciP01DORFJP (100% identity) | M1.Hci60917ORF9240P | |
| 9245 | M | 63 aa hypothetical protein | M2.Hci60917ORF9240P | |
| 9250 | R | HciP01DORFKP (53% identity) | Hci60917ORF9240P | |
| 9255 | MFS transporter | |||
| 9600 | septum site-determining protein MinD | |||
| 9605 | R | HciP01DORFGP (100% identity) | Hci60917ORF9610P | |
| 9610 | M | M.HciP01DORFGP (100% identity) | M.Hci60917ORF9610P | |
| 9615 | argininosuccinate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 210 | saccharopine dehydrogenase family protein | |||
| 215 | M | M.HciP01DORFB1P (100% identity) | M.Hci60917ORF215P | |
| 220 | ATPase | |||
| 225 | hydroxyacid dehydrogenase | |||
| 230 | R | Hci7095ORF9755P (100% identity) | Hci60917ORF215P | |
| 235 | chemotaxis protein | |||
| 6705 | 270 aa hypothetical protein | |||
| 6710 | R | HciP01DORFOP (99% identity) | Hci60917ORF6715P | |
| 6715 | M | M.HciP01DORFOP (100% identity) | M.Hci60917ORF6715P | |
| 6720 | SAM-dependent methyltransferase | |||
| 9215 | aldo/keto reductase | |||
| 9220 | M | M.HciP01DORFIP (95% identity) | M.Hci60917ORF9220P | |
| 9225 | R | HciP01DORFIP (99% identity) | Hci60917ORF9220P | |
| 9230 | MerR family transcriptional regulator | |||