Vibrio parahaemolyticus |
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Putative Vibrio parahaemolyticus RM systems
Ref: Kanrar,S. and Dhar,A.K. unpublished
REBASE ref # 27055
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,477,006 bp | CP028342 |
| chromosome 2: | 1,818,054 bp | CP028343 |
| plasmid pVpR13_55Kb: | 55,412 bp | CP028345 |
REBASE acronym: VpaR13
Org_num: 29096
All begin C7Y67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 12675 | 806 aa hypothetical protein | |||
| 12680 | R | VphR14ORF12605P (100% identity) | VpaR13ORF12720P | |
| 12685 | site-specific DNA-methyltransferase | |||
| 12690 | 94 aa hypothetical protein | |||
| 12695 | 68 aa hypothetical protein | |||
| 12700 | elongation factor Ts | |||
| 12705 | 49 aa hypothetical protein | |||
| 12710 | 36 aa hypothetical protein | |||
| 12715 | 132 aa hypothetical protein | |||
| 12720 | M | M.VphR14ORF12605P (100% identity) | M.VpaR13ORF12720P | |
| 12725 | S | S.VphR14ORF12605P (100% identity) | S.VpaR13ORF12720P | |
| 12730 | 331 aa hypothetical protein | |||
| 14255 | 0 aa hypothetical protein | |||
| 14260 | R | VphR14ORF14160P (100% identity) | VpaR13ORF14275P | |
| 14265 | 428 aa hypothetical protein | |||
| 14270 | multidrug transporter | |||
| 14275 | M | M.VphR14ORF14160P (100% identity) | M.VpaR13ORF14275P | |
| 14280 | S | S.VphR14ORF14160P (100% identity) | S.VpaR13ORF14275P | |
| 14285 | 331 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1215 | cell division protein DamX | |||
| 1220 | M | M.VphVPD14DamP (100% identity) | GATC | M.VpaR13DamP |
| 1225 | ribulose-phosphate 3-epimerase | |||
| 12680 | DEAD/DEAH box helicase | |||
| 12685 | M | M.VphR14ORF12570P (94% identity) | M.VpaR13ORF12685P | |
| 12690 | 94 aa hypothetical protein | |||
| 14150 | RNA polymerase sigma factor RpoD | |||
| 14160 | M | M.VphR14ORF14045P (100% identity) | M.VpaR13ORF14160P | |
| 14165 | ATP-binding protein | |||
| chromosome 2 | ||||
| 24925 | BREX system P-loop protein BrxC | |||
| 24930 | RM | VphR14ORF18210P (100% identity) | VpaR13ORF24930P | |
| 24935 | DUF3944 domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 15385 | 129 aa hypothetical protein | |||
| 15390 | R | VphR14ORF15280P (100% identity) | VpaR13ORF15395P | |
| 15395 | M | M.Vvu93ORF2530P (100% identity) | M.VpaR13ORF15395P | |
| 15400 | 62 aa hypothetical protein | |||
| plasmid pVpR13_55Kb | ||||
| 26065 | mobile mystery protein B | |||
| 26070 | R | VphR14ORF25980P (100% identity) | VpaR13ORF26075P | |
| 26075 | M | M.VphR14ORF25980P (100% identity) | M.VpaR13ORF26075P | |
| 26080 | transcription factor | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 14230 | sensor domain-containing diguanylate cyclase | |||
| 14235 | R | Vpa1799MrrP (100% identity) | VpaR13MrrP | |
| 14240 | transcriptional regulator | |||