Helicobacter pylori FDAARGOS_298 |
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Putative Helicobacter pylori FDAARGOS_298 RM systems
Ref: Kerrigan,L. et al. unpublished
REBASE ref # 26296
Complete sequence: 1,680,898 bp
GenBank #: CP028325
REBASE acronym: HpyS298
Org_num: 28630
All begin CEP77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 855 | outer membrane beta-barrel protein HofF | |||
| 860 | S | S.HpyC11637ORF1015P (100% identity) | S.HpyS298ORF860P | |
| 865 | cadmium-translocating P-type ATPase | |||
| 1145 | hydroxyethylthiazole kinase | |||
| 1150 | R | HpyC11637ORF1074P (100% identity) | HpyS298ORF1160P | |
| 1155 | S | S.HpyC11637ORF1074P (100% identity) | S.HpyS298ORF1160P | |
| 1160 | M | M.HpyC11637ORF1074P (100% identity) | M.HpyS298ORF1160P | |
| 1165 | type I restriction endonuclease | |||
| 2540 | DUF115 domain-containing protein | |||
| 2545 | R | HpyC11637ORF1349P (100% identity) | HpyS298ORF2550P | |
| 2550 | M | M.HpyC11637ORF1349P (100% identity) | M.HpyS298ORF2550P | |
| 2555 | S | S.HpyC11637ORF1349P (100% identity) | S.HpyS298ORF2550P | |
| 2565 | RNA degradosome polyphosphate kinase | |||
| 3965 | cagY like protein | |||
| 3970 | S | S1.Hpy43504ORFCP (100% identity) | S1.HpyS298ORF3970P | |
| 3975 | 60 aa hypothetical protein | |||
| 3980 | S | S2.Hpy43504ORFCP (95% identity) | S2.HpyS298ORF3970P | |
| 3985 | formyltetrahydrofolate deformylase | |||
| 4725 | integrase | |||
| 4730 | S | S.Hpy43504ORF126P (100% identity) | S.HpyS298ORF4740P | |
| 4735 | CAAX protease | |||
| 4740 | M | M.Hpy43504ORF126P (100% identity) | M.HpyS298ORF4740P | |
| 4745 | R | Hpy43504ORF126P (99% identity) | HpyS298ORF4740P | |
| 4750 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | glycerol-3-phosphate dehydrogenase | |||
| 250 | RM | HpyC11637ORF892P (100% identity) | HpyS298ORF250P | |
| 255 | 481 aa hypothetical protein | |||
| 1460 | flagellar hook protein FlgE | |||
| 1465 | R | HpyC11637IXP (100% identity) | GTNNAC | HpyS298IVP |
| 1470 | M | M.HpyC11637IX (100% identity) | GTNNAC | M.HpyS298IV |
| 1475 | ATP-dependent DNA helicase | |||
| 2230 | restriction endonuclease subunit M | |||
| 2235 | M | type II restriction endonuclease | M.HpyS298ORF2235P | |
| 2240 | R | HpyC11637ORF1285P (100% identity) | TCNNGA | HpyS298ORF2235P |
| 2245 | Laminin subunit alpha-2 precursor | |||
| 2435 | 61 aa hypothetical protein | |||
| 2440 | R | HpyC11637ORF1328P (100% identity) | HpyS298ORF2445P | |
| 2445 | M | M.HpyC11637ORF1328P (100% identity) | M.HpyS298ORF2445P | |
| 2450 | restriction endonuclease | |||
| 2445 | DNA (cytosine-5-)-methyltransferase | |||
| 2450 | R | HpyC11637IIIP (100% identity) | ACNGT | HpyS298IIP |
| 2455 | M | M.HpyC11637III (100% identity) | ACNGT | M.HpyS298II |
| 2460 | translational GTPase TypA | |||
| ??? | modification methylase VspI domain protein | |||
| ??? | M | M.HpyC11637II (100% identity) | ATTAAT | M.HpyS298V |
| 2470 | 367 aa hypothetical protein | |||
| 3200 | 122 aa hypothetical protein | |||
| 3205 | M | M.HpyC11637VI (100% identity) | CTNAG | M.HpyS298VI |
| 3210 | R | HpySW33VP (100% identity) | CTNAG | HpyS298VIP |
| 3215 | polysaccharide deacetylase | |||
| 3445 | ATP-dependent chaperone ClpB | |||
| 3450 | M | M.HpyC11637ORF1528P (100% identity) | CCGG | M.HpyS298ORF3450P |
| 3455 | R | HpyC11637ORF1528P (100% identity) | CCGG | HpyS298ORF3450P |
| 3460 | 148 aa hypothetical protein | |||
| 3460 | 148 aa hypothetical protein | |||
| 3465 | M | M.HpyC11637X (100% identity) | TCGA | M.HpyS298IX |
| 3470 | exodeoxyribonuclease VII large subunit | |||
| 3675 | peptidase S41 | |||
| 3680 | RM | Hpy43504ORF1528P (92% identity) | HpyS298ORF3680P | |
| 3685 | nicotinate-nucleotide diphosphorylase | |||
| 4170 | DEAD/DEAH box helicase | |||
| 4175 | RM | HpyC11637ORF11P (100% identity) | HpyS298ORF4175P | |
| 4180 | 64 aa hypothetical protein | |||
| 4260 | outer membrane protein | |||
| 4265 | R | HpyC11637IVP (100% identity) | CCATC | HpyS298VIIP |
| 4270 | M | M2.HpyC11637IV (100% identity) | CCATC | M2.HpyS298VII |
| 4275 | M | M1.HpyC11637IV (100% identity) | CCATC | M1.HpyS298VII |
| 4280 | permease | |||
| 4405 | amidophosphoribosyltransferase | |||
| 4410 | RM | HpyC11637ORF59P (100% identity) | HpyS298ORF4410P | |
| 4415 | S | S.HpyC11637ORF59P (100% identity) | S.HpyS298ORF4410P | |
| 4420 | DNA polymerase I | |||
| 5365 | agmatine deiminase | |||
| 5370 | M | M1.HpyC11637V (100% identity) | CCTC | M1.HpyS298VIII |
| 5375 | M | M2.HpyC11637VP (100% identity) | CCTC | M2.HpyS298VIIIP |
| 5380 | R | HpyC11637VP (100% identity) | CCTC | HpyS298VIIIP |
| 5385 | site-specific DNA-methyltransferase | |||
| 5380 | restriction endonuclease | |||
| 5385 | M | M.HpySW04VI (100% identity) | GTSAC | M.HpyS298ORF5385P |
| 5390 | R | Hpyfe32ORF6935P (100% identity) | GTSAC | HpyS298ORF5385P |
| 5395 | DNA cytosine methyltransferase | |||
| 5615 | 325 aa hypothetical protein | |||
| 5620 | M | M.HpyC11637VII (100% identity) | GATC | M.HpyS298III |
| 5625 | alpha-1,2-fucosyltransferase | |||
| 6060 | elongation factor P | |||
| 6065 | M | M.HpyC11637ORF383P (100% identity) | M.HpyS298ORF6065P | |
| 6070 | 256 aa hypothetical protein | |||
| 6075 | R | R1.HpyIS8ORF1100P (97% identity) | R1.HpyS298ORF6065P | |
| 6080 | R | HpyC11637ORF383P (100% identity) | R2.HpyS298ORF6065P | |
| 6085 | pseudaminic acid synthase | |||
| 7165 | IceA2 protein | |||
| 7170 | M | M.HpyC11637I (100% identity) | CATG | M.HpyS298I |
| 7175 | HAD family hydrolase | |||
| 7650 | flagellar biosynthesis protein FlgM | |||
| 7655 | M | M.HpyC11637ORF697P (98% identity) | GCGC | M.HpyS298ORF7655P |
| 7660 | 144 aa hypothetical protein | |||
| 7755 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 7760 | M | M.HpyC11637VIII (100% identity) | GTAC | M.HpyS298ORF7760P |
| 7765 | R | HpyC11637VIIIP (100% identity) | GTAC | HpyS298ORF7760P |
| 7770 | 60 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3735 | DNA-binding response regulator | |||
| 3740 | M | M.Hpy43504ORF1541P (100% identity) | M.HpyS298ORF3740P | |
| 3745 | R | HpyC11637ORF1590P (100% identity) | HpyS298ORF3740P | |
| 3750 | rod shape-determining protein MreC | |||
| 3800 | DNA/RNA non-specific endonuclease | |||
| 3805 | M | M.HpyC11637ORF1604P (100% identity) | M.HpyS298ORF3805P | |
| 3810 | R | Hpy43504ORFDP (100% identity) | HpyS298ORF3805P | |
| 3815 | type III restriction endonuclease subunit R | |||
| 4155 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy43504ORFEP (100% identity) | M.HpyS298ORF4160P | |
| 4170 | R | HpyC11637ORF8P (100% identity) | HpyS298ORF4160P | |
| 4175 | class I SAM-dependent DNA methyltransferase | |||