Helicobacter pylori Cuz20 |
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Putative Helicobacter pylori Cuz20 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 12053
Complete sequence: 1,635,449 bp
GenBank #: CP002076
REBASE acronym: Hpy20
Org_num: 6351
All begin HPCU_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2520 | polyphosphate kinase | |||
| 2530 | S | S.Hpy120ORF2240P (99% identity) | S.Hpy20ORF2535P | |
| 2535 | M | M.HpySH007ORF2305P (99% identity) | M.Hpy20ORF2535P | |
| ??? | R | HpySH014ORF2290P (97% identity) | Hpy20ORF2535P | |
| 2555 | 631 aa hypothetical protein | |||
| 4185 | 50 aa hypothetical protein | |||
| 4190 | S | S.HpyPU001ORF3250P (65% identity) | S.Hpy20ORF4190P | |
| 4195 | cadmium-transporting ATPase | |||
| 4480 | N-acetylneuraminic acid synthetase | |||
| 4485 | R | HpySORF2560P (98% identity) | Hpy20ORF4495P | |
| 4490 | S | S.HpyH014ORF4160P (97% identity) | S.Hpy20ORF4495P | |
| 4495 | M | M.HpySH014XIII (99% identity) | M.Hpy20ORF4495P | |
| 4500 | thiamine-phosphate pyrophosphorylase | |||
| 7205 | 30 aa hypothetical protein | |||
| 7210 | S | S.Hpyfe35ORF7575P (77% identity) | S.Hpy20ORF7210P | |
| 7215 | formyltetrahydrofolate hydrolase | |||
| 7705 | 30 aa hypothetical protein | |||
| 7710 | S | S.HpyOK44ORFHP (78% identity) | S.Hpy20ORFBP | |
| 7715 | 258 aa hypothetical protein | |||
| ??? | M | M.Hpy417ORF7480P (59% identity) | M.Hpy20ORFBP | |
| 7730 | R | Hpy112ORF7755P (99% identity) | Hpy20ORFBP | |
| 7735 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 215 | 330 aa hypothetical protein | |||
| 220 | M | M1.Hpy417ORF220P (100% identity) | CCTC | M1.Hpy20ORF220P |
| 225 | M | M2.HpyC026IXP (99% identity) | CCTC | M2.Hpy20ORF220P |
| ??? | R | HpyAs006IVP (97% identity) | CCTC | Hpy20ORF220P |
| 240 | type II DNA modification enzyme | |||
| ??? | restriction endonuclease | |||
| 240 | M | M.Hpy169ORF250P (100% identity) | GTSAC | M.Hpy20ORF240P |
| 245 | R | HpySH014XP (100% identity) | GTSAC | Hpy20ORF240P |
| 250 | type II DNA modification enzyme | |||
| 245 | type II restriction enzyme | |||
| 250 | M | type II DNA modification enzyme | M.Hpy20ORF250P | |
| 255 | adenine/cytosine DNA methyltransferase | |||
| 415 | malonyl CoA-acyl carrier protein transacylase | |||
| 425 | R | HpySH010IXP (97% identity) | GATC | Hpy20ORF430P |
| 430 | M | M.HpyAs009ORF465P (99% identity) | GATC | M.Hpy20ORF430P |
| 445 | 176 aa hypothetical protein | |||
| 1620 | exodeoxyribonuclease VII large subunit | |||
| 1625 | M | M.HpySH010XI (100% identity) | TCGA | M.Hpy20ORF1625P |
| 1630 | 204 aa hypothetical protein | |||
| 1630 | 204 aa hypothetical protein | |||
| ??? | R | HpySH007IVP (92% identity) | CCGG | Hpy20ORF1645P |
| 1645 | M | M.HpySH007IV (100% identity) | CCGG | M.Hpy20ORF1645P |
| 1650 | ATP-dependent protease binding subunit (clpB) | |||
| 1885 | 293 aa hypothetical protein | |||
| 1890 | R | HpySH014VIIP (99% identity) | CTNAG | Hpy20ORF1895P |
| 1895 | M | M.HpySH010V (99% identity) | CTNAG | M.Hpy20ORF1895P |
| 1900 | 118 aa hypothetical protein | |||
| 2090 | GTP-binding protein LepA | |||
| 2095 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpy20ORF2095P |
| 2100 | 156 aa hypothetical protein | |||
| 2265 | sec-independent translocase | |||
| 2270 | M | M.HpySH014ORF2030P (100% identity) | GDGCHC | M.Hpy20ORF2270P |
| 2275 | Holliday junction DNA helicase RuvB | |||
| 2615 | outer membrane protein (omp22) | |||
| 2620 | M | M.HpySH007III (99% identity) | ATTAAT | M.Hpy20ORF2620P |
| 2625 | type II adenine specific methyltransferase | |||
| 2630 | 599 aa hypothetical protein | |||
| 2635 | M | M.HpyAs006II (100% identity) | ACNGT | M.Hpy20ORF2635P |
| 2640 | R | HpyAs006IIP (100% identity) | ACNGT | Hpy20ORF2635P |
| 2645 | 33 aa hypothetical protein | |||
| 3610 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| ??? | RM | HpySH007ORF3460P (97% identity) | Hpy20ORF3615P | |
| 3625 | outer membrane protein (omp14) | |||
| 3695 | 270 aa hypothetical protein | |||
| 3700 | M | M.HpySORF3420P (100% identity) | CCNNGG | M.Hpy20ORF3700P |
| 3705 | R | Hpyfe65ORF3785P (99% identity) | CCNNGG | Hpy20ORF3700P |
| 3710 | 133 aa hypothetical protein | |||
| 4515 | type I restriction-modification system, M | |||
| ??? | M | M.HpySORF2550P (99% identity) | GGCC | M.Hpy20ORFAP |
| 4530 | R | HpySORF2550P (100% identity) | GGCC | Hpy20ORFAP |
| 4535 | 225 aa hypothetical protein | |||
| 5680 | 144 aa hypothetical protein | |||
| 5685 | M | M.Hpy417ORF5315P (100% identity) | GCGC | M.Hpy20ORF5685P |
| 5690 | flgM protein | |||
| 6155 | 222 aa hypothetical protein | |||
| 6160 | M | M.HpySORF6255P (98% identity) | CATG | M.Hpy20ORF6160P |
| 6165 | 52 aa hypothetical protein | |||
| 6895 | protease | |||
| 6900 | RM | adenine specific DNA methyltransferase | Hpy20ORF6900P | |
| 6905 | 297 aa hypothetical protein | |||
| 6900 | adenine specific DNA methyltransferase | |||
| 6905 | R | HpySH010VIIIP (98% identity) | GANTC | Hpy20ORF6910P |
| 6910 | M | M.HpySH014VIII (100% identity) | GANTC | M.Hpy20ORF6910P |
| 6915 | adenine specific DNA methyltransferase | |||
| 6910 | adenine specific DNA methyltransferase (HINFIM) | |||
| 6915 | RM | HpySG17ORF290P (87% identity) | Hpy20ORF6915P | |
| 6920 | nicotinate-nucleotide pyrophosphorylase | |||
| 6970 | transcriptional regulator | |||
| 6975 | R | HpyHP32VIIIP (98% identity) | GAAGA | Hpy20ORF6980P |
| ??? | M | M1.HpyLIM7V (98% identity) | GAAGA | M1.Hpy20ORF6980P |
| 6990 | M | M.HpyPE11III (100% identity) | GAAGA | M2.Hpy20ORF6980P |
| ??? | 807 aa hypothetical protein K747_08715 | |||
| ??? | type IIS restriction enzyme M1 protein | |||
| 6990 | M | M.HpyPE11III (100% identity) | GAAGA | M.Hpy20ORF6990P |
| 6995 | Adenine-specific DNA methylase | |||
| 7410 | DNA polymerase I (polA) | |||
| 7415 | S | S.HpyAs005VII (99% identity) | S.Hpy20ORF7420P | |
| 7420 | RM | HpyAs009ORF7105P (98% identity) | Hpy20ORF7420P | |
| 7425 | 191 aa hypothetical protein | |||
| 7630 | transcription elongation factor NusA | |||
| 7635 | RM | HpyPU002ORF7065P (68% identity) | Hpy20ORF7635P | |
| 7640 | type III restriction enzyme | |||
| 7830 | 67 aa hypothetical protein | |||
| 7835 | M | M.HpyPU006XIII (100% identity) | TGCA | M.Hpy20ORF7835P |
| 7840 | R | HpySH010XIIP (99% identity) | TGCA | Hpy20ORF7835P |
| 7845 | 48 aa hypothetical protein | |||
| 7845 | 48 aa hypothetical protein | |||
| 7850 | M | M.Hpy417ORF7775P (99% identity) | M.Hpy20ORF7850P | |
| 7870 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6990 | type IIS restriction enzyme M2 protein (mod) | |||
| ??? | M | M.HpySH014ORF6595P (99% identity) | M.Hpy20ORF6995P | |
| 7005 | R | HpySH007ORF6590P (99% identity) | Hpy20ORF6995P | |
| 7010 | rod shape-determining protein MreC | |||
| 7060 | endonuclease | |||
| 7065 | M | M.HpyPU002ORF6485P (96% identity) | M.Hpy20ORF7065P | |
| 7070 | R | HpySH014ORF6660P (93% identity) | Hpy20ORF7065P | |
| 7075 | biotin synthase | |||
| 7635 | type II DNA modification enzyme | |||
| 7640 | R | HpySH010ORF7530P (97% identity) | Hpy20ORF7645P | |
| ??? | M | M.HpySH007ORF7230P (98% identity) | M.Hpy20ORF7645P | |
| 7655 | ATP-dependent DNA helicase RecG | |||