Helicobacter pylori PeCan4 |
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Putative Helicobacter pylori PeCan4 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 12052
Complete sequence: 1,629,557 bp
GenBank #: CP002074 (NC_014555)
REBASE acronym: Hpy4
Org_num: 6350
All begin HPPC_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2210 | 36 aa hypothetical protein | |||
| 2215 | S | S.HpyC80ORFGP (98% identity) | S.Hpy4ORF2220P | |
| 2220 | M | M.HpySP304IV (96% identity) | M.Hpy4ORF2220P | |
| 2225 | R | HpyBR3ORF2105P (90% identity) | Hpy4ORF2220P | |
| 2230 | 631 aa hypothetical protein | |||
| 3980 | outer membrane protein HofF | |||
| 3985 | S | S.HpySP807ORF4065P (96% identity) | S.Hpy4ORF3985P | |
| 3990 | cadmium-transporting ATPase | |||
| 4280 | hydroxyethylthiazole kinase | |||
| 4285 | R | HpyH010ORF4025P (95% identity) | Hpy4ORF4291P | |
| 4290 | S | S.HpyU406XII (95% identity) | S.Hpy4ORF4291P | |
| ??? | M | type I restriction endonuclease | M.Hpy4ORF4291P | |
| 4305 | 225 aa hypothetical protein | |||
| 6975 | 85 aa hypothetical protein | |||
| 6980 | S | S.HpyF006XII (97% identity) | S.Hpy4ORF6980P | |
| 6985 | formyltetrahydrofolate hydrolase | |||
| 7510 | 30 aa hypothetical protein | |||
| 7515 | S | S.HpyMM04ORF6635P (95% identity) | S.Hpy4ORF7525P | |
| 7520 | 258 aa hypothetical protein | |||
| 7525 | M | M.HpyPU008ORF7520P (98% identity) | M.Hpy4ORF7525P | |
| 7530 | R | HpyU406IVP (95% identity) | Hpy4ORF7525P | |
| 7535 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 225 | 330 aa hypothetical protein | |||
| ??? | M | M1.HpyPE114V (77% identity) | CCTC | M1.Hpy4ORF240P |
| 240 | M | M2.HpyK008IVP (79% identity) | CCTC | M2.Hpy4ORF240P |
| 245 | proline permease (putP) | |||
| 465 | HrgA protein | |||
| 470 | M | M.HpySP305X (98% identity) | GATC | M.Hpy4ORF470P |
| 485 | 176 aa hypothetical protein | |||
| 1310 | exodeoxyribonuclease VII large subunit | |||
| 1315 | M | M.Hpy135ORF1345P (98% identity) | TCGA | M.Hpy4ORF1315P |
| 1330 | Endonuclease MjaVIP | |||
| 1315 | type II DNA modification enzyme | |||
| 1330 | R | HpyMA06VIIP (99% identity) | CCGG | Hpy4ORF1335P |
| 1335 | M | M.HpySORF1370P (99% identity) | CCGG | M.Hpy4ORF1335P |
| 1340 | ATP-dependent protease binding subunit / | |||
| 1575 | 293 aa hypothetical protein | |||
| ??? | R | Hpy1357ORFDP (73% identity) | CTNAG | Hpy4ORF1590P |
| 1590 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.Hpy4ORF1590P |
| 1595 | 119 aa hypothetical protein | |||
| 2295 | outer membrane protein (omp22) | |||
| 2300 | M | M.HpySW19IV (96% identity) | ATTAAT | M.Hpy4ORF2300P |
| 2305 | type II adenine specific methyltransferase | |||
| 2310 | GTP-binding protein | |||
| 2315 | M | M.HpySP209II (99% identity) | ACNGT | M.Hpy4ORF2315P |
| 2320 | 32 aa hypothetical protein | |||
| 2325 | R | type II restriction endonuclease | ACNGT | Hpy4ORF2315P |
| 2330 | type II DNA modification enzyme | |||
| 2325 | type II restriction endonuclease | |||
| 2330 | M | M.HpySH007ORF2410P (99% identity) | ACGT | M.Hpy4ORF2330P |
| ??? | R | HpySORF2375P (95% identity) | ACGT | Hpy4ORF2330P |
| 2350 | 50 aa hypothetical protein | |||
| ??? | modification methylase MjaII | |||
| 2970 | R | Hpy1768ORFKP (99% identity) | GGNCC | Hpy4ORF2965P |
| 2975 | ISHp608 OrfA | |||
| 3335 | 133 aa hypothetical protein | |||
| 3340 | R | Hpyfe65ORF3785P (94% identity) | CCNNGG | Hpy4ORF3341P |
| ??? | M | M.HpyTW24IV (99% identity) | CCNNGG | M.Hpy4ORF3341P |
| 3355 | 270 aa hypothetical protein | |||
| 3445 | outer membrane protein HorF | |||
| 3450 | RM | Hpy499ORF7105P (88% identity) | Hpy4ORF3450P | |
| 3455 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 4580 | flagellar hook protein FlgE | |||
| 4585 | R | HpyL008XIP (97% identity) | GTNNAC | Hpy4ORF4590P |
| 4590 | M | M.HpyPE16II (97% identity) | GTNNAC | M.Hpy4ORF4590P |
| 4595 | rep helicase, single-stranded DNA-dependent | |||
| 5265 | biotin carboxylase | |||
| 5270 | M | M.HpyU203XII (99% identity) | TCNNGA | M.Hpy4ORF5270P |
| 5275 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpy4ORF5270P |
| 5280 | 199 aa hypothetical protein | |||
| 5445 | 144 aa hypothetical protein | |||
| 5450 | M | M.HpySP315XV (98% identity) | GCGC | M.Hpy4ORF5450P |
| 5455 | 67 aa hypothetical protein | |||
| 5900 | 222 aa hypothetical protein | |||
| 5905 | M | M.HpyC126I (98% identity) | CATG | M1.Hpy4ORF5905P |
| 5910 | M | ulcer-associated gene restriction endonuclease | CATG | M2.Hpy4ORF5905P |
| 5915 | R | iceA1 | CATG | Hpy4ORF5905P |
| 5920 | serine acetyltransferase | |||
| 6645 | protease | |||
| 6650 | R | HpyPE130VIP (98% identity) | GANTC | Hpy4ORF6655P |
| 6655 | M | M.HpySP108VI (99% identity) | GANTC | M.Hpy4ORF6655P |
| 6660 | adenine specific DNA methyltransferase | |||
| 6655 | adenine specific DNA methyltransferase (HINFIM) | |||
| 6660 | RM | HpyC103ORF6530P (82% identity) | Hpy4ORF6660P | |
| 6665 | nicotinate-nucleotide pyrophosphorylase | |||
| 6715 | transcriptional regulator | |||
| 6720 | M | type IIS restriction enzyme M1 protein (mod) | GAAGA | M1.Hpy4ORF6720P |
| 6725 | M | M2.Hpyfe118ORF7240P (98% identity) | GAAGA | M2.Hpy4ORF6720P |
| 6730 | 302 aa hypothetical protein | |||
| 6880 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 6885 | R | 60 aa hypothetical protein | CGCG | Hpy4ORF6890P |
| ??? | M | M.HpyV006ORF6595P (98% identity) | CGCG | M.Hpy4ORF6890P |
| 6900 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7200 | 79 aa hypothetical protein | |||
| 7205 | M | M1.HpySP706X (99% identity) | GGATG | M1.Hpy4ORF7205P |
| 7210 | M | M2.HpyPU006ORF7160P (99% identity) | GGATG | M2.Hpy4ORF7205P |
| 7215 | R | HpyPU006ORF7160P (99% identity) | GGATG | Hpy4ORF7205P |
| 7220 | 191 aa hypothetical protein | |||
| 7430 | transcription elongation factor NusA | |||
| 7435 | RM | HpyC66ORFUP (74% identity) | Hpy4ORF7435P | |
| 7440 | 727 aa hypothetical protein | |||
| 7620 | 67 aa hypothetical protein | |||
| 7625 | M | M.HpyU205XII (98% identity) | TGCA | M.Hpy4ORF7625P |
| 7630 | R | HpyMTT79ORFYP (99% identity) | TGCA | Hpy4ORF7625P |
| 7635 | 48 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2935 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
| ??? | R | Hpy225ORF600P (96% identity) | Hpy4ORF2960P | |
| ??? | M | M.HpyCOL5ORF4015P (81% identity) | M.Hpy4ORF2960P | |
| 2970 | type II restriction endonuclease TdeIII | |||
| 2985 | ABC transporter, ATP-binding protein/permease, | |||
| 2990 | M | adenine specific DNA methyltransferase | M.Hpy4ORF2990P | |
| 2995 | 54 aa hypothetical protein | |||
| 4120 | 149 aa hypothetical protein | |||
| 4125 | R | HpySORF7085P (97% identity) | Hpy4ORF4130P | |
| ??? | M | M.HpyLIM10ORF7025P (95% identity) | M.Hpy4ORF4130P | |
| 4140 | osmoprotection protein (proWX) | |||
| 6815 | endonuclease | |||
| 6820 | M | M.HpyL020XVIII (94% identity) | M.Hpy4ORF6820P | |
| 6825 | R | Hpy340ORF7820P (90% identity) | Hpy4ORF6820P | |
| 6830 | biotin synthase | |||
| 7440 | 727 aa hypothetical protein | |||
| 7445 | R | HpyPE18ORF6910P (95% identity) | Hpy4ORF7450P | |
| ??? | M | M.Hpy340ORF980P (97% identity) | M.Hpy4ORF7450P | |
| 7460 | ATP-dependent DNA helicase RecG | |||