Helicobacter pylori SJM180 |
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Putative Helicobacter pylori SJM180 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 12051
Complete sequence: 1,658,051 bp
GenBank #: CP002073 (NC_014560)
REBASE acronym: Hpy180
Org_num: 6349
All begin HPSJM_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2305 | 36 aa hypothetical protein | |||
| 2310 | S | S.HpySW15ORF2205P (99% identity) | S.Hpy180ORF2315P | |
| 2315 | M | M.HpyPE107ORF2175P (97% identity) | M.Hpy180ORF2315P | |
| ??? | R | HpyU410ORF4025P (89% identity) | Hpy180ORF2315P | |
| 2330 | 631 aa hypothetical protein | |||
| 4300 | hydroxyethylthiazole kinase | |||
| 4305 | R | Hpy355ORF4905P (95% identity) | Hpy180ORF4311P | |
| 4310 | S | S.HpySP324ORF2390P (97% identity) | S.Hpy180ORF4311P | |
| ??? | M | M.HpyPE119XV (97% identity) | M.Hpy180ORF4311P | |
| 4325 | integral membrane protein | |||
| 7495 | DNA polymerase I | |||
| 7500 | S | S.HpyLI26ORF7085P (94% identity) | S.Hpy180ORF7500P | |
| 7505 | restriction enzyme BcgI alpha chain-like | |||
| 7825 | 49 aa hypothetical protein | |||
| 7830 | S | S.HpyG004ORF6685P (97% identity) | S.Hpy180ORF7835P | |
| ??? | M | M.HpySP401ORF7275P (95% identity) | M.Hpy180ORF7835P | |
| 7845 | R | HpyPR02ORF7465P (95% identity) | Hpy180ORF7835P | |
| 7850 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 265 | 330 aa hypothetical protein | |||
| 270 | M | M1.HpyPE11VIII (99% identity) | CCTC | M1.Hpy180ORF270P |
| 275 | M | M2.HpyPE119VIIP (100% identity) | CCTC | M2.Hpy180ORF270P |
| ??? | R | HpyG63ORFBP (95% identity) | CCTC | Hpy180ORF270P |
| 290 | 419 aa hypothetical protein | |||
| ??? | restriction endonuclease | |||
| 290 | R | HpySP407VIIP (99% identity) | CCTTC | Hpy180ORF295P |
| 295 | M | M.HpySP403VII (99% identity) | CCTTC | M.Hpy180ORF295P |
| 300 | sodium/proline symporter | |||
| 520 | HrgA protein | |||
| 525 | M | M.HpyAR4VII (97% identity) | GATC | M.Hpy180ORF525P |
| 540 | 176 aa hypothetical protein | |||
| 955 | elongation factor P | |||
| 960 | M | M.HpyPU004ORF890P (98% identity) | M.Hpy180ORF960P | |
| 965 | 256 aa hypothetical protein | |||
| 970 | restriction enzyme | |||
| 975 | R | R2.HpySP706ORF840P (99% identity) | Hpy180ORF960P | |
| 980 | sialic acid synthase | |||
| 1420 | exodeoxyribonuclease VII large subunit | |||
| 1425 | R | Hpy120ORF1330P (81% identity) | CCGG | Hpy180ORF1430P |
| 1430 | M | M.HpyPU006V (98% identity) | CCGG | M.Hpy180ORF1430P |
| 1435 | ATP-dependent protease binding subunit (clpB) | |||
| 2390 | outer membrane protein HopK | |||
| 2395 | M | M.Hpyfe82ORF4775P (97% identity) | ATTAAT | M.Hpy180ORF2395P |
| 2400 | non-functional type II restriction | |||
| 2405 | 599 aa hypothetical protein | |||
| 2410 | M | M.Hpy42KORF2535P (99% identity) | ACNGT | M.Hpy180ORF2410P |
| 2415 | R | HpyGM4IIP (99% identity) | ACNGT | Hpy180ORF2410P |
| 2420 | type II DNA modification enzyme | |||
| 2415 | type II restriction endonuclease | |||
| 2420 | M | M.HpySG36ORF4335P (95% identity) | ACGT | M.Hpy180ORF2420P |
| 2425 | catalase-like protein | |||
| 2510 | DNA gyrase subunit B | |||
| 2515 | M | M.HpyC207VIII (99% identity) | GTAC | M.Hpy180ORF2515P |
| 2520 | R | HpyPE104VIIIP (99% identity) | GTAC | Hpy180ORF2515P |
| 2525 | 406 aa hypothetical protein | |||
| 3390 | anaerobic glycerol-3-phosphate | |||
| ??? | RM | HpyPO105ORF2655P (91% identity) | Hpy180ORF3395P | |
| 3405 | 52 aa hypothetical protein | |||
| 3990 | outer membrane protein | |||
| 3995 | R | HpyT004ORF4005P (100% identity) | GCSGC | Hpy180ORF4000P |
| 4000 | M | M.HpySP803ORF2895P (100% identity) | GCSGC | M.Hpy180ORF4000P |
| 4005 | cadmium-transporting ATPase | |||
| 4630 | flagellar hook protein FlgE | |||
| 4635 | R | HpyC119IXP (95% identity) | GTNNAC | Hpy180ORF4640P |
| 4640 | M | M.HpyPE11X (97% identity) | GTNNAC | M.Hpy180ORF4640P |
| 4645 | rep helicase, single-stranded DNA-dependent | |||
| 5340 | biotin carboxylase | |||
| 5345 | M | M.HpyLIM2XIII (99% identity) | TCNNGA | M.Hpy180ORF5345P |
| ??? | R | HpyU208ORF1415P (99% identity) | TCNNGA | Hpy180ORF5345P |
| 5360 | 199 aa hypothetical protein | |||
| 5550 | 144 aa hypothetical protein | |||
| 5555 | M | M.HpyPE119XVI (100% identity) | GCGC | M.Hpy180ORF5555P |
| 5560 | 67 aa hypothetical protein | |||
| 6035 | 222 aa hypothetical protein | |||
| 6040 | M | M.Hpy135ORF6200P (98% identity) | CATG | M.Hpy180ORF6040P |
| 6045 | R | HpyJF38ORFAP (94% identity) | CATG | Hpy180ORF6040P |
| 6050 | serine acetyltransferase | |||
| 6765 | protease | |||
| ??? | R | HpyPE119ORF6400P (100% identity) | GANTC | Hpy180ORFAP |
| ??? | M | M.HpyPE119ORF6400P (89% identity) | GANTC | M.Hpy180ORFAP |
| 6790 | 320 aa hypothetical protein | |||
| ??? | DNA methyltransferase | |||
| 6790 | RM | Hpy29ORF6870P (25% identity) | Hpy180ORF6790P | |
| 6795 | adenine specific DNA methyltransferase | |||
| 6850 | response regulator | |||
| 6855 | R | HpyID9ORF6420P (88% identity) | GAAGA | Hpy180ORF6855P |
| 6860 | 69 aa hypothetical protein | |||
| 7025 | 39 aa hypothetical protein | |||
| 7030 | M | M2.HpyME10V (98% identity) | GAAGA | M.Hpy180ORF7030P |
| 7035 | adenine-specific DNA methylase | |||
| 7425 | cytochrome c551 peroxidase | |||
| 7430 | R | HpyJO3ORF7675P (97% identity) | Hpy180ORF7435P | |
| 7435 | M | M2.HpyPE124ORF7390P (99% identity) | M1.Hpy180ORF7435P | |
| 7440 | M | M2.HpySP611ORF7175P (99% identity) | M2.Hpy180ORF7435P | |
| 7445 | addiction module antidote protein | |||
| 7500 | type II restriction enzyme | |||
| 7505 | RM | HpySP301ORF7465P (98% identity) | Hpy180ORF7505P | |
| 7510 | 191 aa hypothetical protein | |||
| 7640 | 355 aa hypothetical protein | |||
| 7645 | M | M1.HpyPE138III (99% identity) | CCATC | M1.Hpy180ORF7645P |
| 7650 | M | M2.HpyPU008III (93% identity) | GATGG | M2.Hpy180ORF7645P |
| 7655 | R | HpyPU007IVP (98% identity) | CCATC | Hpy180ORF7645P |
| 7660 | outer membrane protein (omp32) | |||
| 7745 | 30 aa hypothetical protein | |||
| 7750 | RM | HpyL025XVIII (91% identity) | Hpy180ORF7750P | |
| ??? | type III restriction enzyme | |||
| 7935 | 67 aa hypothetical protein | |||
| 7940 | M | M.HpySP06V (98% identity) | TGCA | M.Hpy180ORF7940P |
| ??? | R | HpyI001VP (98% identity) | TGCA | Hpy180ORF7940P |
| 7955 | Ubiquinol cytochrome c oxidoreductase, | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7030 | type IIS restriction enzyme M2 protein (mod) | |||
| 7035 | M | M.HpyLIM3XIV (95% identity) | M.Hpy180ORF7035P | |
| 7040 | R | HpyIS10ORF6305P (91% identity) | Hpy180ORF7035P | |
| 7045 | rod shape-determining protein MreC | |||
| 7095 | endonuclease G | |||
| 7100 | M | M.HpyME44ORF6900P (94% identity) | M.Hpy180ORF7100P | |
| 7105 | R | HpySP404ORF6635P (84% identity) | Hpy180ORF7100P | |
| 7110 | biotin synthase | |||
| 7750 | type IIS restriction-modification protein | |||
| ??? | R | HpyPE136XIXP (96% identity) | Hpy180ORF7765P | |
| ??? | M | M.HpyPOR109ORF7250P (95% identity) | M.Hpy180ORF7765P | |
| 7775 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 965 | 256 aa hypothetical protein | |||
| 970 | R | R1.HpyC61ORFGP (95% identity) | Hpy180McrBP | |
| 975 | 404 aa hypothetical protein | |||