Variovorax species PMC12 |
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Putative Variovorax species PMC12 RM systems
Ref: Weon,H.-Y. and Lee,S.A. unpublished
REBASE ref # 26458
Complete sequence: 5,873,297 bp
GenBank #: CP027773
REBASE acronym: VspPMC12
Org_num: 28858
All begin C4F17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15045 | AAA family ATPase | |||
| 15050 | S | S2.CbaOS4ORF34650P (35% identity) | GACNNNNNNNTGCT | S1.VspPMC12I |
| ??? | S | S1.HspNH16ORFBP (74% identity) | GACNNNNNNNTGCT | S2.VspPMC12IP |
| ??? | M | M.HspNH16ORFBP (66% identity) | GACNNNNNNNTGCT | M.VspPMC12I |
| 15065 | R | TspS2ORFBP (86% identity) | GACNNNNNNNTGCT | VspPMC12IP |
| 15070 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12365 | 105 aa hypothetical protein | |||
| 12370 | M | M.PciTE3ORF23220P (67% identity) | M.VspPMC12ORF12370P | |
| 12375 | helicase | |||
| 12455 | 365 aa hypothetical protein | |||
| 12460 | M | M.VspWDL1ORF726P (79% identity) | M.VspPMC12ORF12460P | |
| 12465 | 118 aa hypothetical protein | |||
| 26395 | 85 aa hypothetical protein | |||
| 26400 | R | Vsp026ORF25795P (100% identity) | VspPMC12ORF26400P | |
| 26410 | class 1 fructose-bisphosphatase | |||
| 26715 | RNA-binding protein | |||
| 26720 | M | M.Dsp313ORF1931P (82% identity) | M2.VspPMC12ORF26710P | |
| 26725 | 74 aa hypothetical protein | |||