Helicobacter pylori Sat464 |
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Putative Helicobacter pylori Sat464 RM systems
Ref: Kersulyte,D. et al. unpublished
REBASE ref # 12047
Complete sequence: 1,560,342 bp
GenBank #: CP002071
REBASE acronym: Hpy464
Org_num: 6348
All begin HPSAT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2195 | 36 aa hypothetical protein | |||
| 2200 | S | S.HpyAs005XV (99% identity) | S.Hpy464ORF2205P | |
| 2205 | M | M.HpyAs005XV (100% identity) | M.Hpy464ORF2205P | |
| 2210 | R | HpyAs004ORF2240P (98% identity) | Hpy464ORF2205P | |
| 2215 | 631 aa hypothetical protein | |||
| 2475 | site-specific DNA methyltransferase | |||
| 2480 | M | M.HpyAs005XVIII (98% identity) | M.Hpy464ORF2480P | |
| 2485 | S | S.HpyS299ORF1890P (64% identity) | S.Hpy464ORF2480P | |
| 2490 | R | HpyAs005XVIIIP (98% identity) | R1.Hpy464ORF2480P | |
| 2495 | hydroxyethylthiazole kinase | |||
| 2500 | thiamine biosynthesis protein (thi) | |||
| 2505 | thiamine-phosphate pyrophosphorylase | |||
| 2520 | R | R1.Hpy464ORF2480P (74% identity) | R2.Hpy464ORF2480P | |
| 2525 | N-acetylneuraminic acid synthetase | |||
| 2835 | cadmium-transporting ATPase | |||
| 2840 | S | S.HpyPE101ORF3190P (97% identity) | S.Hpy464ORF2800P | |
| 2845 | outer membrane protein HofF | |||
| 6850 | 30 aa hypothetical protein | |||
| 6855 | S | S.HpyMM10ORF7305P (94% identity) | S.Hpy464ORF6855P | |
| 6860 | formyltetrahydrofolate hydrolase | |||
| 7370 | FAD-dependent thymidylate synthase | |||
| 7375 | S | S.HpyF232ORFGP (98% identity) | S.Hpy464ORF7385P | |
| 7380 | 258 aa hypothetical protein | |||
| 7385 | M | M.Hpy417ORF7480P (99% identity) | M.Hpy464ORF7385P | |
| 7390 | R | HpyAs009ORF7400P (98% identity) | Hpy464ORF7385P | |
| 7395 | 235 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | 330 aa hypothetical protein | |||
| 245 | M | M1.HpyAs009ORF250P (100% identity) | CCTC | M1.Hpy464ORF245P |
| 250 | M | M2.HpyAs009ORF250P (100% identity) | CCTC | M2.Hpy464ORF245P |
| 255 | R | HpyP30ORFMP (95% identity) | CCTC | Hpy464ORF245P |
| 260 | adenine/cytosine DNA methyltransferase | |||
| 415 | malonyl CoA-acyl carrier protein transacylase | |||
| 425 | R | HpyAs009ORF465P (99% identity) | GATC | Hpy464ORF430P |
| 430 | M | M.HpySH011VIII (99% identity) | GATC | M.Hpy464ORF430P |
| 445 | 176 aa hypothetical protein | |||
| 1295 | exodeoxyribonuclease VII large subunit | |||
| 1300 | M | M.HpyTN2ORF3270P (99% identity) | TCGA | M.Hpy464ORF1300P |
| 1305 | 204 aa hypothetical protein | |||
| 1305 | 204 aa hypothetical protein | |||
| 1310 | R | HpyFR3IIIP (79% identity) | CCGG | Hpy464ORF1315P |
| 1315 | M | M.HpyPE106V (99% identity) | CCGG | M.Hpy464ORF1315P |
| 1320 | ATP-dependent protease binding subunit (clpB) | |||
| 1550 | 293 aa hypothetical protein | |||
| 1555 | R | HpySORF1620P (100% identity) | CTNAG | Hpy464ORF1560P |
| 1560 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.Hpy464ORF1560P |
| 1565 | 125 aa hypothetical protein | |||
| 1765 | GTP-binding protein LepA | |||
| 1770 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpy464ORF1770P |
| 1775 | 156 aa hypothetical protein | |||
| 2280 | outer membrane protein (omp22) | |||
| 2285 | M | M.HpyME28VII (98% identity) | ATTAAT | M.Hpy464ORF2285P |
| 2290 | type II adenine specific methyltransferase | |||
| 2295 | 599 aa hypothetical protein | |||
| 2300 | M | M.HpySH007II (100% identity) | ACNGT | M.Hpy464ORF2300P |
| 2305 | R | HpyCRI3IIP (99% identity) | ACNGT | Hpy464ORF2300P |
| 2310 | type II DNA modification enzyme | |||
| 2305 | type II restriction endonuclease | |||
| 2310 | M | M.HpySH014ORF2410P (99% identity) | ACGT | M.Hpy464ORF2310P |
| 2315 | R | HpySH014ORF2410P (99% identity) | ACGT | Hpy464ORF2310P |
| 2320 | catalase-like protein | |||
| 2465 | 225 aa hypothetical protein | |||
| 2470 | R | HpySORF2550P (99% identity) | GGCC | Hpy464ORF2475P |
| 2475 | M | M.HpysHP34ORF6260P (99% identity) | GGCC | M.Hpy464ORF2475P |
| 2480 | type I restriction-modification system, M | |||
| 3440 | 32 aa hypothetical protein | |||
| 3445 | RM | HpySORF3515P (95% identity) | Hpy464ORF3445P | |
| 3450 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 4445 | flagellar hook protein FlgE | |||
| 4450 | R | restriction endonuclease | GTNNAC | Hpy464ORF4455P |
| 4455 | M | M.HpyAs006VIII (98% identity) | GTNNAC | M.Hpy464ORF4455P |
| 4460 | rep helicase, single-stranded DNA-dependent | |||
| 5175 | biotin carboxylase | |||
| 5180 | M | M.HpyAs009XII (100% identity) | TCNNGA | M.Hpy464ORF5180P |
| 5185 | R | HpyAs009XIIP (100% identity) | TCNNGA | Hpy464ORF5180P |
| 5190 | 199 aa hypothetical protein | |||
| 5365 | 144 aa hypothetical protein | |||
| 5370 | M | M.HpySORF5770P (100% identity) | GCGC | M.Hpy464ORF5370P |
| 5375 | 29 aa hypothetical protein | |||
| 5825 | 222 aa hypothetical protein | |||
| 5830 | M | M.HpyAs005I (98% identity) | CATG | M.Hpy464ORF5830P |
| 5835 | 59 aa hypothetical protein | |||
| 6540 | protease | |||
| 6545 | RM | adenine specific DNA methyltransferase | Hpy464ORF6545P | |
| 6550 | 297 aa hypothetical protein | |||
| 6545 | adenine specific DNA methyltransferase | |||
| 6550 | R | HpySORF7000P (99% identity) | GANTC | Hpy464ORF6555P |
| 6555 | M | M.HpyAs009X (100% identity) | GANTC | M.Hpy464ORF6555P |
| 6560 | adenine specific DNA methyltransferase | |||
| 6555 | adenine specific DNA methyltransferase (HINFIM) | |||
| 6560 | RM | Hpy112ORF6790P (97% identity) | Hpy464ORF6560P | |
| 6565 | nicotinate-nucleotide pyrophosphorylase | |||
| 6615 | transcriptional regulator | |||
| 6620 | R | HpyAs006VP (82% identity) | GAAGA | Hpy464ORF6620P |
| 6625 | type II restriction endonuclease | |||
| 6620 | type IIS restriction enzyme R protein (MBOIIR) | |||
| 6625 | R | HpySORF7080P (100% identity) | GATATC | Hpy464ORF6630P |
| 6630 | M | M.HpySORF7080P (100% identity) | GATATC | M.Hpy464ORF6630P |
| ??? | DNA methylase | |||
| 7070 | DNA polymerase I (polA) | |||
| 7075 | S | S.HpyC002ORF7270P (97% identity) | S.Hpy464ORF7080P | |
| 7080 | RM | HpyAs009ORF7105P (98% identity) | Hpy464ORF7080P | |
| 7085 | 191 aa hypothetical protein | |||
| 7215 | 355 aa hypothetical protein | |||
| 7220 | M | M2.Hpyfe88ORF155P (98% identity) | GATGG | M1.Hpy464ORF7220P |
| 7225 | M | M2.HpySH007ORF7135P (93% identity) | GATGG | M2.Hpy464ORF7220P |
| 7230 | R | HpySH007ORF7135P (94% identity) | CCATC | Hpy464ORF7220P |
| 7235 | outer membrane protein HopK | |||
| 7305 | transcription elongation factor NusA | |||
| 7310 | RM | HpyT017XIV (86% identity) | Hpy464ORF7310P | |
| 7315 | type III restriction enzyme | |||
| 7485 | 67 aa hypothetical protein | |||
| 7490 | M | M.HpySH011XI (100% identity) | TGCA | M.Hpy464ORF7490P |
| 7495 | R | HpyPU001XP (100% identity) | TGCA | Hpy464ORF7490P |
| 7500 | 93 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6630 | DNA adenine methylase | |||
| ??? | M | M.HpySH011ORF6600P (98% identity) | M.Hpy464ORF6635P | |
| 6645 | R | Hpy169ORF6810P (99% identity) | Hpy464ORF6635P | |
| 6650 | rod shape-determining protein MreC | |||
| 6700 | endonuclease | |||
| 6705 | M | M.HpyAL05ORFTP (96% identity) | M.Hpy464ORF6705P | |
| ??? | R | HpyPE114XVIIP (93% identity) | Hpy464ORF6705P | |
| 6720 | biotin synthase | |||
| 7310 | type II S restriction-modification protein | |||
| 7315 | R | HpyPE111ORF7280P (97% identity) | Hpy464ORF7320P | |
| 7320 | M | M.HpyPE112ORF6805P (98% identity) | M.Hpy464ORF7320P | |
| 7325 | ATP-dependent DNA helicase RecG | |||