Bacteroides caccae ATCC 43185 |
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Putative Bacteroides caccae ATCC 43185 RM systems
Ref: Beaulaurier,J. et al. Nat. Biotechnol. 36 (1), 61-69 (2018)
REBASE ref # 25194
Contig set: 4,577,788 bp
GenBank #: PUEQ00000000 (NZ_PUEQ00000000)
REBASE acronym: Bca43195F
Org_num: 27862
All begin C5Z00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1885 | 134 aa hypothetical protein | |||
| 1890 | S | S1.Msa17ORFW1P (100% identity) | S4.Bca43195FORF1915P | |
| 1895 | integrase | |||
| 1900 | S | S4.Bca1097ORF7640P (100% identity) | S3.Bca43195FORF1915P | |
| 1905 | S | S3.Msa17ORFW1P (100% identity) | S2.Bca43195FORF1915P | |
| ??? | S | S4.Msa17ORFW1P (100% identity) | S1.Bca43195FORF1915P | |
| 1915 | M | M.Msa17ORFW1P (100% identity) | M.Bca43195FORF1915P | |
| 1920 | HNH endonuclease | |||
| 1925 | R | Msa17ORFW1P (96% identity) | Bca43195FORF1915P | |
| 1930 | C | C.Msa17ORFW1P (100% identity) | C.Bca43195FORF1915P | |
| 1935 | AraC family transcriptional regulator | |||
| 11460 | DUF262 domain-containing protein | |||
| 11465 | R | Msa17ORFWP (100% identity) | Bca43195FORF11485P | |
| 11470 | S | S2.BccORFFP (100% identity) | S1.Bca43195FORF11485P | |
| 11475 | integrase | |||
| 11480 | S | S2.Msa17ORFWP (100% identity) | S2.Bca43195FORF11485P | |
| 11485 | M | M2.Bun901ORF13185P (100% identity) | M2.Bca43195FORF11485P | |
| 11490 | M | M1.Msa17ORFWP (100% identity) | M1.Bca43195FORF11485P | |
| 11495 | ATP-binding protein | |||
| 18190 | recombinase | |||
| 18195 | C | C.Msa17ORFG1P (100% identity) | C.Bca43195FORF18200P | |
| ??? | M | M1.Msa17ORFF1P (100% identity) | M1.Bca43195FORF18200P | |
| 18205 | M | M2.Msa17ORFF1P (100% identity) | M2.Bca43195FORF18200P | |
| 18210 | S | S2.Msa17ORFF1P (100% identity) | S1.Bca43195FORF18200P | |
| 18215 | transcriptional regulator | |||
| 18220 | integrase | |||
| 18225 | S | S1.Msa17ORFF1P (51% identity) | S2.Bca43195FORF18200P | |
| 18230 | R | Msa17ORFF1P (100% identity) | Bca43195FORF18200P | |
| 18235 | 504 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3580 | clindamycin resistance transfer factor BtgB | |||
| 3585 | M | M.PmeBin96ORFEP (100% identity) | M.Bca43195FORF3585P | |
| 3590 | DGQHR domain-containing protein | |||
| 6015 | carbamoyl-phosphate synthase | |||
| 6020 | M | M1.PmeBin35ORFAP (100% identity) | CCATC | M1.Bca43195FORF6020P |
| 6025 | M | M2.Msa17ORFZ1P (100% identity) | CCATC | M2.Bca43195FORF6020P |
| 6030 | R | Msa17ORFZ1P (100% identity) | CCATC | Bca43195FORF6020P |
| 6035 | integrase | |||
| 9560 | sulfate adenylate transferase | |||
| 9565 | M | M.Msa17ORFJ2P (100% identity) | M.Bca43195FORF9565P | |
| 9570 | endonuclease | |||
| 9605 | 182 aa hypothetical protein | |||
| 9610 | M | M.Msa17ORFI2P (100% identity) | M.Bca43195FORF9610P | |
| 9615 | 67 aa hypothetical protein | |||
| 17110 | 64 aa hypothetical protein | |||
| 17115 | M | M.Bca100ORF16975P (100% identity) | M.Bca43195FORF17115P | |
| 17120 | DNA methyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11525 | 247 aa hypothetical protein | |||
| 11530 | R | PmeBin35McrCP (100% identity) | Bca43195FMcrCP | |
| 11535 | R | Msa17McrBP (100% identity) | Bca43195FMcrBP | |
| 11540 | 144 aa hypothetical protein | |||