Helicobacter pylori FDAARGOS_300 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori FDAARGOS_300 RM systems
Ref: Kerrigan,L. et al. unpublished
REBASE ref # 26296
Complete sequence: 1,645,738 bp
GenBank #: CP027404
REBASE acronym: HpyS300
Org_num: 28631
All begin CEP79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3055 | cagY like domain protein | |||
| 3060 | S | S.Hpy99XV (42% identity) | S2.HpyS300ORF3070P | |
| 3065 | S | S.HpyJ99aORF4490P (66% identity) | S1.HpyS300ORF3070P | |
| 3070 | M | M.HpyJ99bORF7180P (100% identity) | M.HpyS300ORF3070P | |
| 3075 | R | Hpy99XVP (99% identity) | HpyS300ORF3070P | |
| 3080 | M48 family peptidase | |||
| 5680 | 59 aa hypothetical protein | |||
| 5685 | S | S.HpyU428ORF2165P (100% identity) | CCANNNNNNTTT | S.HpyS300ORF5690P |
| 5690 | M | M.HpyU428ORF2165P (99% identity) | CCANNNNNNTTT | M.HpyS300ORF5690P |
| 5695 | R | HpyJ99aORF6990P (99% identity) | CCANNNNNNTTT | HpyS300ORF5690P |
| 5700 | DUF115 domain-containing protein | |||
| 7625 | hydroxyethylthiazole kinase | |||
| 7630 | R | Hpy99XVI (86% identity) | HpyS300ORF7640P | |
| 7635 | S | S.HpyU303XIV (94% identity) | S.HpyS300ORF7640P | |
| 7640 | M | M.HpyJ99bORF2750P (100% identity) | M.HpyS300ORF7640P | |
| 7645 | type I restriction endonuclease subunit M | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 815 | acetyl-CoA carboxylase biotin carboxylase | |||
| 820 | M | M.HpyJ99bORF1560P (100% identity) | TCNNGA | M.HpyS300X |
| 825 | R | HpySP202XP (100% identity) | TCNNGA | HpyS300XP |
| 830 | Laminin subunit alpha-2 precursor | |||
| 1020 | hypothetical protein | |||
| 1025 | R | HpyU429XVIP (100% identity) | GCGC | HpyS300ORF1030P |
| ??? | M | M.HpyJ99bORF1350P (98% identity) | GCGC | M.HpyS300ORF1030P |
| 1035 | flagellar biosynthesis protein FlgM | |||
| 1500 | HAD family hydrolase | |||
| 1505 | M | M.HpyMT5135I (100% identity) | CATG | M.HpyS300I |
| 1510 | IceA2 protein | |||
| 2230 | S41 family peptidase | |||
| 2235 | R | HpyJ99bORF175P (100% identity) | GANTC | HpyS300VIIP |
| 2240 | M | M.HpyJ99bORF175P (100% identity) | GANTC | M.HpyS300VII |
| 2245 | DNA methyltransferase | |||
| 2240 | site-specific DNA-methyltransferase | |||
| 2245 | RM | HpyPO18ORF6485P (83% identity) | GGWTAA | HpyS300ORF2245P |
| 2250 | nicotinate-nucleotide pyrophosphorylase | |||
| 2760 | DNA polymerase I | |||
| 2765 | S | S.HpyJ99bORF7485P (94% identity) | CYANNNNNNTGA | S.HpyS300XIV |
| 2770 | RM | HpyJ99aORF4185P (100% identity) | CYANNNNNNTGA | HpyS300XIV |
| 2775 | ComF family protein | |||
| 2980 | CAAX protease | |||
| 2985 | RM | Hpy99XIII (100% identity) | GCCTA | HpyS300XIII |
| 2990 | DEAD/DEAH box helicase | |||
| 3155 | 68 aa hypothetical protein | |||
| 3160 | R | Hpy99ORF1442P (100% identity) | HpyS300ORF3160P | |
| 3165 | DNA-binding response regulator | |||
| 3710 | agmatine deiminase | |||
| 3715 | M | M2.HpyJ99bORF6560P (100% identity) | CCTC | M1.HpyS300XI |
| 3720 | DNA cytosine methyltransferase | |||
| 3715 | site-specific DNA-methyltransferase | |||
| 3720 | M | M1.HpyJ99bORF6560P (100% identity) | CCTC | M2.HpyS300XIIP |
| 3730 | site-specific DNA-methyltransferase | |||
| 3720 | DNA cytosine methyltransferase | |||
| 3730 | M | M.HpyJ99bORF6555P (100% identity) | GTSAC | M.HpyS300ORF3730P |
| 3735 | R | HpyU428IXP (100% identity) | GTSAC | HpyS300ORF3730P |
| 3740 | type II restriction endonuclease | |||
| 3925 | [acyl-carrier-protein] S-malonyltransferase | |||
| ??? | R | HpyJ99aORF5315P (100% identity) | GATC | HpyS300VIP |
| 3945 | M | M.HpyJ99bORF6355P (100% identity) | GATC | M.HpyS300VI |
| 3950 | alpha-1,2-fucosyltransferase | |||
| 4365 | 0 aa hypothetical protein | |||
| 4370 | R | R2.HpyJ99bORFAP (100% identity) | R1.HpyS300ORF4375P | |
| 4375 | R | R2.HpyU428ORF885P (100% identity) | R2.HpyS300ORF4375P | |
| 4380 | pseudaminic acid synthase | |||
| 4790 | exodeoxyribonuclease VII large subunit | |||
| 4795 | M | M.Hpy99VII (100% identity) | TCGA | M.HpyS300IX |
| 4800 | 152 aa hypothetical protein | |||
| 4800 | 152 aa hypothetical protein | |||
| ??? | R | Hpy99VIIIP (100% identity) | CCGG | HpyS300IIIP |
| 4810 | M | M.HpyU418II (100% identity) | CCGG | M.HpyS300III |
| 4815 | chaperone protein ClpB | |||
| 5765 | outer membrane beta-barrel protein | |||
| 5770 | M | M.HpyJ99bORF4595P (100% identity) | ATTAAT | M.HpyS300II |
| 5775 | lipopolysaccharide heptosyltransferase family | |||
| 5780 | translational GTPase TypA | |||
| 5785 | M | M.HpyJ99bORF4580P (100% identity) | ACNGT | M.HpyS300ORF5785P |
| 5790 | R | HpyJ99bORF4580P (100% identity) | ACNGT | HpyS300ORF5785P |
| 5795 | DNA (cytosine-5-)-methyltransferase | |||
| 5790 | restriction endonuclease | |||
| 5795 | M | M.HpyJ99bORF4570P (100% identity) | ACGT | M.HpyS300ORF5795P |
| 5800 | R | Hpy99XIP (100% identity) | ACGT | HpyS300ORF5795P |
| 5805 | DUF262 domain-containing protein | |||
| 5900 | DNA gyrase subunit B | |||
| 5905 | M | M.HpyJ99bORF4470P (100% identity) | GTAC | M.HpyS300VIII |
| 5910 | R | HpyJ99bORF4470P (100% identity) | GTAC | HpyS300VIIIP |
| 5915 | M23 family peptidase | |||
| 6725 | (Fe-S)-binding protein | |||
| 6730 | RM | Hpy99ORF612P (100% identity) | HpyS300ORF6730P | |
| 6735 | outer membrane protein | |||
| 6810 | 3-5 exonuclease | |||
| 6815 | M | M.HpyJ99bORF3555P (100% identity) | CCNNGG | M.HpyS300IV |
| 6820 | R | HpyJ99bORF3555P (100% identity) | CCNNGG | HpyS300IVP |
| 6825 | acetone carboxylase subunit gamma | |||
| 7325 | outer membrane beta-barrel protein HofF | |||
| 7330 | S | S.Hpy99XVII (100% identity) | AAGNNNNNNCTC | S.HpyS300ORF7330P |
| 7335 | cadmium-translocating P-type ATPase | |||
| 7470 | osmoprotection protein | |||
| 7475 | R | HpyJ99bORF2910P (100% identity) | CGWCG | HpyS300VP |
| 7480 | M | M.HpyJ99bORF2910P (100% identity) | CGWCG | M.HpyS300V |
| 7485 | osmoprotection protein | |||
| 7955 | flagellar hook protein FlgE | |||
| 7960 | R | HpyJ99aORF1310P (100% identity) | GTNNAC | HpyS300ORF7965P |
| 7965 | M | M.HpyJ99bORF2440P (98% identity) | GTNNAC | M.HpyS300ORF7965P |
| 7970 | ATP-dependent helicase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2300 | DNA-binding response regulator | |||
| 2305 | M | M.HpyJ99bORF100P (100% identity) | M.HpyS300ORF2305P | |
| 2310 | R | HpyJ99bORF100P (100% identity) | HpyS300ORF2305P | |
| 2315 | rod shape-determining protein MreC | |||
| 2375 | DNA/RNA non-specific endonuclease | |||
| 2380 | M | M.HpyU428ORF7410P (100% identity) | M.HpyS300ORF2380P | |
| 2385 | R | HpyJ99aORF3815P (98% identity) | HpyS300ORF2380P | |
| 2390 | 60 aa hypothetical protein | |||
| 2985 | class I SAM-dependent DNA methyltransferase | |||
| 2990 | R | Hpy99XXIP (100% identity) | GWCAY | HpyS300ORF2995P |
| 2995 | M | M.HpyJ99bORF7250P (100% identity) | GWCAY | M.HpyS300ORF2995P |
| 3000 | ATP-dependent DNA helicase RecG | |||