Escherichia coli O104:H4 FDAARGOS_349 |
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Putative Escherichia coli O104:H4 FDAARGOS_349 RM systems
Ref: Minogue,T. et al. unpublished
REBASE ref # 26297
| Sequence length: | GenBank #: | |
| Chromosome: | 5,277,316 bp | CP027394 |
| plasmid unnamed1: | 117,229 bp | CP027395 |
REBASE acronym: Eco349
Org_num: 27900
All begin CEQ27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20805 | endoribonuclease SymE | |||
| 20810 | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.Eco349I |
| 20815 | M | M.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | M.Eco349I |
| 20820 | R | SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | Eco349IP |
| 20825 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1305 | TrmB family transcriptional regulator | |||
| 1310 | M | M.SsoL4094ORF17545P (100% identity) | A | M.Eco349ORF1310P |
| 1330 | 108 aa hypothetical protein | |||
| 5410 | DUF1737 domain-containing protein | |||
| 5430 | M | M.EcoOS402ORF3850P (100% identity) | A | M.Eco349ORF5430P |
| 5435 | 67 aa hypothetical protein | |||
| 5470 | LexA family transcriptional regulator | |||
| 5475 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco349ORF5475P |
| 5480 | PerC family transcriptional regulator | |||
| 6080 | drug/metabolite exporter YedA | |||
| 6085 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco349DcmP |
| 6090 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.Eco349Dcm |
| 6095 | phosphohydrolase | |||
| 13890 | Fis family transcriptional regulator | |||
| 13895 | M | M.EcotcmA3ORF12410P (100% identity) | ATGCAT | M.Eco349ORF13895P |
| 13900 | DUF2556 domain-containing protein | |||
| 14480 | ribulose-phosphate 3-epimerase | |||
| 14485 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco349DamP |
| 14490 | cell division protein DamX | |||
| 26835 | 70 aa hypothetical protein | |||
| 26840 | M | M.Esp10290ORF1290P (100% identity) | GATC | M.Eco349ORF26840P |
| 26845 | regulator | |||
| 26930 | 215 aa hypothetical protein | |||
| 26935 | R | Sso1099IP (100% identity) | CTGCAG | Eco349IIIP |
| 26940 | M | M.Sso1099I (100% identity) | CTGCAG | M.Eco349III |
| 26945 | LexA family transcriptional repressor | |||
| plasmid unnamed1 | ||||
| 28815 | 0 aa hypothetical protein | |||
| 28820 | M | M.Sso3794ORF26595P (100% identity) | SAY | M.Eco349ORF28820P |
| 28825 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11780 | serine protease | |||
| 11785 | M | M.Kpn0718ORF815P (100% identity) | ACCACC | M.Eco349II |
| 11790 | R | Kpn0718ORF815P (100% identity) | ACCACC | Eco349IIP |
| 11795 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20790 | DUF1127 domain-containing protein | |||
| 20795 | R | SflLIN8GmrSDP (34% identity) | Eco349GmrSP | |
| ??? | R | EcoM1887GmrSDP (65% identity) | Eco349GmrDP | |
| 20805 | endoribonuclease SymE | |||