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Putative Helicobacter pylori 908 RM systems
Ref: Devi,S.H. et al. unpublished
REBASE ref # 12256
Complete sequence: 1,549,666 bp
GenBank #: CP002184
REBASE acronym: Hpy908
Org_num: 6342
All begin hp908_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
453 | Polyphosphate kinase | |||
454 | S | S.Hpy2018ORF445P (100% identity) | S.Hpy908ORF455P | |
455 | M | M.Hpy2018ORF445P (100% identity) | M.Hpy908ORF455P | |
??? | R | HpySP16ORF4340P (92% identity) | Hpy908ORF455P | |
458 | 631 aa hypothetical protein | |||
860 | Hydroxyethylthiazole kinase | |||
861 | R | Hpy2018ORF832P (100% identity) | Hpy908ORF863P | |
862 | S | typeI restriction-modification system subunit S | S.Hpy908ORF863P | |
863 | M | M.Hpy2018ORF832P (100% identity) | M.Hpy908ORF863P | |
864 | Membrane-associated phospholipid phosphatase | |||
1520 | cagY like protein | |||
1521 | S | S.Hpy2018ORF1469P (100% identity) | S.Hpy908ORF1522P | |
??? | M | M.Hpy2018ORF1469P (100% identity) | M.Hpy908ORF1522P | |
1524 | R | Hpy2018ORF1469P (100% identity) | Hpy908ORF1522P | |
1525 | predicted metal-dependent hydrolase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
53 | agmatine deiminase | |||
54 | M | M1.Hpy2018ORF55P (100% identity) | CCTC | M1.Hpy908ORF54P |
55 | M | M2.Hpy2018ORF55P (100% identity) | CCTC | M2.Hpy908ORF54P |
56 | 419 aa hypothetical protein | |||
55 | cytosine specific DNA methyltransferase | |||
56 | R | Hpy2018ORF58P (100% identity) | CCTTC | Hpy908ORF57P |
57 | M | M.Hpy2018ORF58P (100% identity) | CCTTC | M.Hpy908ORF57P |
58 | Proline/sodium symporter Propionate/sodium | |||
101 | 329 aa hypothetical protein | |||
102 | M | M.Hpy2017ORF98P (100% identity) | GATC | M.Hpy908ORF102P |
103 | alpha1,2 fucosyltransferase | |||
271 | Exodeoxyribonuclease VII large subunit | |||
272 | M | M.Hpy2018ORF269P (100% identity) | TCGA | M.Hpy908ORF272P |
273 | 29 aa hypothetical protein | |||
273 | 29 aa hypothetical protein | |||
??? | R | Hpy2018ORF273P (100% identity) | CCGG | Hpy908ORF277P |
277 | M | M.HpyG004II (100% identity) | CCGG | M.Hpy908ORF277P |
278 | ClpB protein | |||
470 | Glutamyl-tRNA synthetase | |||
??? | M | M.Hpy2018ORF4611P (100% identity) | ATTAAT | M.Hpy908ORF471P |
473 | 282 aa hypothetical protein | |||
474 | GTP-binding protein | |||
475 | M | M.Hpy2018ORF463P (100% identity) | ACNGT | M.Hpy908ORF475P |
??? | R | Hpy2018ORF463P (100% identity) | ACNGT | Hpy908ORF475P |
??? | DNA -methyltransferase | |||
??? | 207 aa hypothetical protein HMPREF1391_00383 | |||
??? | M | M.HpyNCI18ORFUP (98% identity) | ACGT | M.Hpy908ORF478P |
??? | R | Hpy2018ORF4651P (100% identity) | ACGT | Hpy908ORF478P |
482 | catalase | |||
499 | DNA gyrase subunit B | |||
500 | M | M.Hpy2018ORF483P (100% identity) | GTAC | M.Hpy908ORF500P |
501 | R | Hpy2018ORF483P (100% identity) | GTAC | Hpy908ORF500P |
502 | metalloendopeptidase like membrane protein | |||
679 | oxidoreductase | |||
680 | RM | Hpy2018ORF6581P (99% identity) | Hpy908ORF680P | |
681 | 828 aa hypothetical protein | |||
695 | Poly saccharide biosynthesis protein | |||
696 | M | M.Hpy2018ORF675P (100% identity) | CCNNGG | M.Hpy908ORF696P |
697 | 37 aa hypothetical protein | |||
698 | R | Hpy2018ORF675P (100% identity) | CCNNGG | Hpy908ORF696P |
699 | Acetone carboxylase gamma subunit | |||
921 | Flagellar hook protein | |||
922 | R | Hpy2018ORF894P (100% identity) | GTNNAC | Hpy908ORF923P |
923 | M | M.Hpy2018ORF894P (99% identity) | GTNNAC | M.Hpy908ORF923P |
924 | ATP-dependent DNA helicase | |||
1077 | Biotin carboxylase of acetyl-CoA carboxylase | |||
1078 | M | M.HpyPO06XI (99% identity) | TCNNGA | M.Hpy908ORF1078P |
1079 | R | HpyK262ORF6170P (100% identity) | TCNNGA | Hpy908ORF1078P |
1080 | 201 aa hypothetical protein | |||
1116 | 144 aa hypothetical protein | |||
1117 | M | M.Hpy2018ORF1078P (100% identity) | GCGC | M.Hpy908ORF1117P |
1118 | FlgM protein | |||
1209 | Haloacid dehalogenase | |||
1210 | M | M.Hpy2018ORF1170P (100% identity) | CATG | M.Hpy908ORF1210P |
1211 | Serine acetyl transferase | |||
1353 | Carboxy terminal protease | |||
1354 | R | Hpy2018ORF1315P (100% identity) | GANTC | Hpy908ORF1355P |
1355 | M | M.Hpy2018ORF1315P (100% identity) | GANTC | M.Hpy908ORF1355P |
1356 | adenine specific DNA methyl transferase | |||
1355 | adenine specific DNA methyltransferase | |||
??? | RM | Hpy2018ORF1318P (99% identity) | Hpy908ORF1358P | |
1359 | Quinolinate phosphoribosyl transferase | |||
1399 | lipopolysaccharide biosynthesis protein | |||
1400 | M | M.HpyU420VI (100% identity) | GAATTC | M.Hpy908ORF1400P |
1401 | R | HpyU420VIP (100% identity) | GAATTC | Hpy908ORF1400P |
1402 | UDP-N-acetyl enol pyruvoyl glucosamine | |||
1452 | DNA polymerase I | |||
1453 | S | S.Hpy2018ORF14081P (43% identity) | S.Hpy908ORF1456P | |
1454 | type II S restriction enzyme R protein | |||
??? | RM | Hpy2018ORF14081P (99% identity) | Hpy908ORF1456P | |
1457 | 185 aa hypothetical protein | |||
1503 | 44 aa hypothetical protein | |||
1504 | RM | Hpy2018ORF1453P (92% identity) | Hpy908ORF1504P | |
1505 | type I DNA modification enzyme | |||
1545 | 67 aa hypothetical protein | |||
1546 | M | M.HpyU105XI (100% identity) | TGCA | M.Hpy908ORF1546P |
1547 | R | Hpy2018ORF1490P (100% identity) | TGCA | Hpy908ORF1546P |
1548 | elongation factor Ts | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1369 | Two-component system ompR family response | |||
??? | M | M2.Hpy2018ORF1332P (100% identity) | M.Hpy908ORF1370P | |
1372 | R | Hpy2018ORF1332P (100% identity) | Hpy908ORF1370P | |
1373 | Rod shape-determining protein | |||
1382 | endonuclease | |||
1383 | M | M.Hpy2018ORF1346P (100% identity) | M.Hpy908ORF1383P | |
??? | R | Hpy2018ORF1346P (99% identity) | Hpy908ORF1383P | |
1386 | Biotin synthase | |||
1505 | type I DNA modification enzyme | |||
1506 | R | Hpy2018ORF14561P (100% identity) | Hpy908ORF1507P | |
??? | M | M.HpyU102ORF6825P (98% identity) | M.Hpy908ORF1507P | |
1509 | ATP-dependent DNA helicase |