Helicobacter pylori 7.13_D3b |
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Putative Helicobacter pylori 7.13_D3b RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,013 bp
GenBank #: CP024022
REBASE acronym: HpyD3b
Org_num: 27777
All begin BXP16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 505 | formyltetrahydrofolate deformylase | |||
| 510 | S | S.HpyR3cORF510P (100% identity) | S.HpyD3bORF510P | |
| 515 | nickel transporter | |||
| 4780 | 0 aa hypothetical protein | |||
| 4785 | S | S.HpyR3cORF4785P (100% identity) | S.HpyD3bORF4785P | |
| 4790 | cadmium-translocating P-type ATPase | |||
| 5065 | hydroxyethylthiazole kinase | |||
| 5070 | R | HpyR3cORF5080P (100% identity) | HpyD3bORF5080P | |
| 5075 | S | S.HpyR3cORF5080P (100% identity) | S.HpyD3bORF5080P | |
| 5080 | M | M.HpyR3cORF5080P (100% identity) | M.HpyD3bORF5080P | |
| 5085 | DNA (cytosine-5-)-methyltransferase | |||
| 5355 | DUF115 domain-containing protein | |||
| 5360 | R | HpyR3cORF5365P (100% identity) | HpyD3bORF5365P | |
| 5365 | M | M.HpyR3cORF5365P (100% identity) | M.HpyD3bORF5365P | |
| ??? | S | S.HpyR3cORF5365P (100% identity) | S.HpyD3bORF5365P | |
| 5380 | RNA degradosome polyphosphate kinase | |||
| 8140 | M48 family peptidase | |||
| 8145 | R | HpyR3cORF8160P (100% identity) | HpyD3bORF8150P | |
| 8150 | M | M.HpyR3cORF8160P (100% identity) | M.HpyD3bORF8150P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyD3bORF8150P | |
| 8165 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | DEAD/DEAH box helicase | |||
| 55 | RM | HpyR3cORF55P (100% identity) | HpyD3bORF55P | |
| 60 | DUF4065 domain-containing protein | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyR3cORF145P (100% identity) | CCATC | HpyD3bORF145P |
| 145 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M1.HpyD3bORF145P |
| 150 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M2.HpyD3bORF145P |
| 155 | YjgP/YjgQ family permease | |||
| 280 | ComF family protein | |||
| 285 | RM | HpyR3cORF285P (100% identity) | HpyD3bORF285P | |
| ??? | S | S.HpyR3cORF285P (100% identity) | S.HpyD3bORF285P | |
| 300 | DNA polymerase I | |||
| 1310 | serine acetyltransferase | |||
| ??? | R | HpyR3cORF1320P (100% identity) | CATG | HpyD3bORF1320P |
| 1320 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyD3bORF1320P |
| 1325 | HAD family hydrolase | |||
| 1500 | purine-nucleoside phosphorylase | |||
| 1505 | R | HpyU408XP (100% identity) | TCNGA | HpyD3bORF1510P |
| 1510 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyD3bORF1510P |
| 1515 | 69 aa hypothetical protein | |||
| 1795 | flagellar biosynthesis protein FlgM | |||
| 1800 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyD3bORF1800P |
| 1805 | 144 aa hypothetical protein | |||
| 1985 | Laminin subunit alpha-2 precursor | |||
| 1990 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyD3bORF1995P |
| 1995 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyD3bORF1995P |
| 2000 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3075 | ATP-dependent helicase | |||
| 3080 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.HpyD3bORF3080P |
| 3085 | R | HpyU437IXP (100% identity) | GTNNAC | HpyD3bORF3080P |
| 3090 | flagellar hook protein FlgE | |||
| 3310 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3315 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyD3bORF3315P |
| 3320 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyD3bORF3315P |
| 3325 | M23 family peptidase | |||
| 4170 | (Fe-S)-binding protein | |||
| 4175 | RM | HpyR3cORF4175P (100% identity) | HpyD3bORF4175P | |
| 4180 | 0 aa hypothetical protein | |||
| 5080 | type I restriction-modification system subunit | |||
| 5085 | M | M.HpyR3cORF5085P (100% identity) | M.HpyD3bORF5085P | |
| 5090 | R | HpyR3cORF5085P (100% identity) | HpyD3bORF5085P | |
| 5095 | phosphatase PAP2 family protein | |||
| 5250 | hypothetical protein | |||
| 5255 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyD3bORF5260P |
| 5260 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyD3bORF5260P |
| 5265 | restriction endonuclease | |||
| 5260 | DNA (cytosine-5-)-methyltransferase | |||
| 5265 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyD3bORF5270P |
| 5270 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyD3bORF5270P |
| 5275 | translational GTPase TypA | |||
| 5280 | glycosyltransferase 9 family protein | |||
| 5285 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyD3bORF5285P |
| 5290 | outer membrane beta-barrel protein | |||
| 6215 | ATP-dependent chaperone ClpB | |||
| 6220 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyD3bORF6220P |
| 6225 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyD3bORF6220P |
| 6230 | hypothetical protein | |||
| 6230 | hypothetical protein | |||
| 6235 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyD3bORF6235P |
| 6240 | exodeoxyribonuclease VII large subunit | |||
| 7060 | alpha-1,2-fucosyltransferase | |||
| ??? | M | M.HpyR3cORF7075P (100% identity) | M.HpyD3bORF7065P | |
| 7080 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7270 | restriction endonuclease | |||
| 7275 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyD3bORF7280P |
| 7280 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyD3bORF7280P |
| 7285 | restriction endonuclease | |||
| 7280 | restriction endonuclease | |||
| 7285 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyD3bORF7290P |
| 7290 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyD3bORF7290P |
| 7295 | M | M1.HpyR3cORF7300P (100% identity) | CCTC | M1.HpyD3bORF7290P |
| 7300 | agmatine deiminase | |||
| 7300 | agmatine deiminase | |||
| 7305 | RM | HpyR3cORF7315P (100% identity) | HpyD3bORF7305P | |
| 7310 | nicotinate-nucleotide diphosphorylase | |||
| 7505 | glycosyltransferase family 8 protein | |||
| 7510 | M | M.HpyR3cORF7520P (100% identity) | M.HpyD3bORF7510P | |
| 7515 | site-specific DNA-methyltransferase | |||
| 8050 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyD3bORF8060P |
| 8060 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyD3bORF8060P |
| 8065 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 40 | ATP-dependent DNA helicase RecG | |||
| 45 | M | M.HpyR3cORF45P (100% identity) | M.HpyD3bORF45P | |
| 50 | R | HpyR3cORF45P (100% identity) | HpyD3bORF45P | |
| 55 | restriction endonuclease | |||
| 7360 | DNA-binding response regulator | |||
| 7365 | M | M.HpyR3cORF7375P (100% identity) | M.HpyD3bORF7365P | |
| 7370 | R | HpyR3cORF7375P (100% identity) | HpyD3bORF7365P | |
| 7375 | rod shape-determining protein MreC | |||
| 7425 | DNA/RNA non-specific endonuclease | |||
| 7430 | M | M.HpyR3cORF7440P (100% identity) | M.HpyD3bORF7430P | |
| 7435 | R | HpyR3cORF7440P (100% identity) | HpyD3bORF7430P | |
| 7440 | biotin synthase | |||