Helicobacter pylori 7.13_D1c |
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Putative Helicobacter pylori 7.13_D1c RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,163 bp
GenBank #: CP024017
REBASE acronym: HpyD1c
Org_num: 27785
All begin BXP10_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 500 | formyltetrahydrofolate deformylase | |||
| 505 | S | S.HpyR3cORF510P (100% identity) | S.HpyD1cORF505P | |
| 510 | nickel transporter | |||
| 4775 | 0 aa hypothetical protein | |||
| 4780 | S | S.HpyR3cORF4785P (100% identity) | S.HpyD1cORF4780P | |
| 4785 | cadmium-translocating P-type ATPase | |||
| 5060 | hydroxyethylthiazole kinase | |||
| 5065 | R | HpyR3cORF5080P (100% identity) | HpyD1cORF5075P | |
| 5070 | S | S.HpyR3cORF5080P (100% identity) | S.HpyD1cORF5075P | |
| 5075 | M | M.HpyR3cORF5080P (100% identity) | M.HpyD1cORF5075P | |
| 5080 | DNA (cytosine-5-)-methyltransferase | |||
| 5350 | DUF115 domain-containing protein | |||
| 5355 | R | HpyD1bORF5355P (100% identity) | HpyD1cORF5360P | |
| 5360 | M | M.HpyR3cORF5365P (100% identity) | M.HpyD1cORF5360P | |
| ??? | S | S.HpyR3cORF5365P (100% identity) | S.HpyD1cORF5360P | |
| 5375 | RNA degradosome polyphosphate kinase | |||
| 8165 | M48 family peptidase | |||
| 8170 | R | HpyR3cORF8160P (100% identity) | HpyD1cORF8175P | |
| 8175 | M | M.HpyR3cORF8160P (100% identity) | M.HpyD1cORF8175P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyD1cORF8175P | |
| 8190 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | DEAD/DEAH box helicase | |||
| 55 | RM | HpyR3cORF55P (100% identity) | HpyD1cORF55P | |
| 60 | hypothetical protein | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyR3cORF145P (100% identity) | HpyD1cORF145P | |
| 145 | M | M1.HpyR3cORF145P (100% identity) | M1.HpyD1cORF145P | |
| 150 | M | M2.HpyR3cORF145P (99% identity) | M2.HpyD1cORF145P | |
| 155 | YjgP/YjgQ family permease | |||
| 280 | ComF family protein | |||
| 285 | RM | HpyR3cORF285P (100% identity) | HpyD1cORF285P | |
| ??? | S | S.HpyR3cORF285P (100% identity) | S.HpyD1cORF285P | |
| 300 | DNA polymerase I | |||
| 1305 | serine acetyltransferase | |||
| ??? | R | HpyR3cORF1320P (100% identity) | CATG | HpyD1cORF1315P |
| 1315 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyD1cORF1315P |
| 1320 | HAD family hydrolase | |||
| 1495 | purine-nucleoside phosphorylase | |||
| 1500 | R | HpyU408XP (100% identity) | TCNGA | HpyD1cORF1505P |
| 1505 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyD1cORF1505P |
| 1510 | 69 aa hypothetical protein | |||
| 1790 | flagellar biosynthesis protein FlgM | |||
| 1795 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyD1cORF1795P |
| 1800 | 144 aa hypothetical protein | |||
| 1980 | Laminin subunit alpha-2 precursor | |||
| 1985 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyD1cORF1990P |
| 1990 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyD1cORF1990P |
| 1995 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3070 | ATP-dependent helicase | |||
| 3075 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.HpyD1cORF3075P |
| 3080 | R | HpyU437IXP (100% identity) | GTNNAC | HpyD1cORF3075P |
| 3085 | flagellar hook protein FlgE | |||
| 3305 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3310 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyD1cORF3310P |
| 3315 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyD1cORF3310P |
| 3320 | M23 family peptidase | |||
| 4165 | (Fe-S)-binding protein | |||
| 4170 | RM | HpyR3cORF4175P (100% identity) | HpyD1cORF4170P | |
| 4175 | 0 aa hypothetical protein | |||
| 5075 | type I restriction-modification system subunit | |||
| 5080 | M | M.HpyR3cORF5085P (100% identity) | M.HpyD1cORF5080P | |
| 5085 | R | HpyR3cORF5085P (100% identity) | HpyD1cORF5080P | |
| 5090 | phosphatase PAP2 family protein | |||
| 5250 | restriction endonuclease | |||
| 5255 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyD1cORF5255P |
| 5260 | restriction endonuclease | |||
| 5260 | restriction endonuclease | |||
| 5265 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyD1cORF5265P |
| 5270 | translational GTPase TypA | |||
| 5275 | glycosyltransferase 9 family protein | |||
| 5280 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyD1cORF5280P |
| 5285 | outer membrane beta-barrel protein | |||
| 6210 | ATP-dependent chaperone ClpB | |||
| 6215 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyD1cORF6215P |
| 6220 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyD1cORF6215P |
| 6225 | hypothetical protein | |||
| 6225 | hypothetical protein | |||
| 6230 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyD1cORF6230P |
| 6235 | exodeoxyribonuclease VII large subunit | |||
| 7065 | alpha-1,2-fucosyltransferase | |||
| ??? | M | M.HpyR3cORF7075P (100% identity) | M.HpyD1cORF7070P | |
| 7085 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7275 | restriction endonuclease | |||
| 7280 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyD1cORF7285P |
| 7285 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyD1cORF7285P |
| 7290 | restriction endonuclease | |||
| 7285 | restriction endonuclease | |||
| 7290 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyD1cORF7295P |
| 7295 | DNA (cytosine-5-)-methyltransferase | |||
| 7300 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyD1cORF7295P |
| 7305 | agmatine deiminase | |||
| 7515 | glycosyltransferase family 8 protein | |||
| 7520 | M | M.HpyR3cORF7520P (100% identity) | M.HpyD1cORF7520P | |
| 7525 | site-specific DNA-methyltransferase | |||
| 8070 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyD1cORF8080P |
| 8080 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyD1cORF8080P |
| 8085 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 40 | ATP-dependent DNA helicase RecG | |||
| 45 | M | M.HpyR3cORF45P (100% identity) | M.HpyD1cORF45P | |
| 50 | R | HpyR3cORF45P (100% identity) | HpyD1cORF45P | |
| 55 | restriction endonuclease | |||
| 7365 | DNA-binding response regulator | |||
| 7370 | M | M.HpyR3cORF7375P (57% identity) | M1.HpyD1cORF7370P | |
| 7375 | M | M.HpyR3cORF7375P (41% identity) | M2.HpyD1cORF7370P | |
| 7380 | R | HpyR3cORF7375P (100% identity) | HpyD1cORF7370P | |
| 7385 | rod shape-determining protein MreC | |||
| 7435 | DNA/RNA non-specific endonuclease | |||
| 7440 | M | M.HpyR3cORF7440P (100% identity) | M.HpyD1cORF7440P | |
| 7445 | R | HpyR3cORF7440P (100% identity) | HpyD1cORF7440P | |
| 7450 | biotin synthase | |||