Helicobacter pylori 7.13_R3b |
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Putative Helicobacter pylori 7.13_R3b RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,019 bp
GenBank #: CP024078
REBASE acronym: HpyR3b
Org_num: 27781
All begin BXP06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 505 | formyltetrahydrofolate deformylase | |||
| 510 | S | S.HpyR3cORF510P (100% identity) | S.HpyR3bORF510P | |
| 515 | nickel transporter | |||
| 4785 | 0 aa hypothetical protein | |||
| 4790 | S | S.HpyR3cORF4785P (100% identity) | S.HpyR3bORF4790P | |
| 4795 | cadmium-translocating P-type ATPase | |||
| 5070 | hydroxyethylthiazole kinase | |||
| 5075 | R | HpyR3cORF5080P (100% identity) | HpyR3bORF5085P | |
| 5080 | S | S.HpyR3cORF5080P (100% identity) | S.HpyR3bORF5085P | |
| 5085 | M | M.HpyR3cORF5080P (100% identity) | M.HpyR3bORF5085P | |
| 5090 | DNA (cytosine-5-)-methyltransferase | |||
| 5360 | DUF115 domain-containing protein | |||
| 5365 | R | HpyR3cORF5365P (100% identity) | HpyR3bORF5370P | |
| 5370 | M | M.HpyR3cORF5365P (100% identity) | M.HpyR3bORF5370P | |
| ??? | S | S.HpyR3cORF5365P (100% identity) | S.HpyR3bORF5370P | |
| 5385 | RNA degradosome polyphosphate kinase | |||
| 8155 | M48 family peptidase | |||
| 8160 | R | HpyR3cORF8160P (100% identity) | HpyR3bORF8165P | |
| 8165 | M | M.HpyR3cORF8160P (100% identity) | M.HpyR3bORF8165P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyR3bORF8165P | |
| 8180 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | DEAD/DEAH box helicase | |||
| 55 | RM | HpyR3cORF55P (100% identity) | HpyR3bORF55P | |
| 60 | DUF4065 domain-containing protein | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyR3cORF145P (100% identity) | CCATC | HpyR3bORF145P |
| 145 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M1.HpyR3bORF145P |
| 150 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M2.HpyR3bORF145P |
| 155 | YjgP/YjgQ family permease | |||
| 280 | ComF family protein | |||
| 285 | RM | HpyR3cORF285P (100% identity) | HpyR3bORF285P | |
| ??? | S | S.HpyR3cORF285P (100% identity) | S.HpyR3bORF285P | |
| 300 | DNA polymerase I | |||
| 1315 | serine acetyltransferase | |||
| ??? | R | HpyR3cORF1320P (100% identity) | CATG | HpyR3bORF1325P |
| 1325 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyR3bORF1325P |
| 1330 | HAD family hydrolase | |||
| 1505 | purine-nucleoside phosphorylase | |||
| 1510 | R | HpyU408XP (100% identity) | TCNGA | HpyR3bORF1515P |
| 1515 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyR3bORF1515P |
| 1520 | 69 aa hypothetical protein | |||
| 1800 | flagellar biosynthesis protein FlgM | |||
| 1805 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyR3bORF1805P |
| 1810 | 144 aa hypothetical protein | |||
| 1990 | Laminin subunit alpha-2 precursor | |||
| 1995 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyR3bORF2000P |
| 2000 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyR3bORF2000P |
| 2005 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3080 | ATP-dependent helicase | |||
| 3085 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.HpyR3bORF3085P |
| 3090 | R | HpyU437IXP (100% identity) | GTNNAC | HpyR3bORF3085P |
| 3095 | flagellar hook protein FlgE | |||
| 3315 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3320 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyR3bORF3320P |
| 3325 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyR3bORF3320P |
| 3330 | M23 family peptidase | |||
| 4175 | (Fe-S)-binding protein | |||
| 4180 | RM | HpyR3cORF4175P (100% identity) | HpyR3bORF4180P | |
| 4185 | 0 aa hypothetical protein | |||
| 5085 | type I restriction-modification system subunit | |||
| 5090 | M | M.HpyR3cORF5085P (100% identity) | M.HpyR3bORF5090P | |
| 5095 | R | HpyR3cORF5085P (100% identity) | HpyR3bORF5090P | |
| 5100 | phosphatase PAP2 family protein | |||
| 5255 | hypothetical protein | |||
| 5260 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyR3bORF5265P |
| 5265 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyR3bORF5265P |
| 5270 | restriction endonuclease | |||
| 5265 | DNA (cytosine-5-)-methyltransferase | |||
| 5270 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyR3bORF5275P |
| 5275 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyR3bORF5275P |
| 5280 | translational GTPase TypA | |||
| 5285 | glycosyltransferase 9 family protein | |||
| 5290 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyR3bORF5290P |
| 5295 | outer membrane beta-barrel protein | |||
| 6220 | ATP-dependent chaperone ClpB | |||
| 6225 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyR3bORF6225P |
| 6230 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyR3bORF6225P |
| 6235 | hypothetical protein | |||
| 6235 | hypothetical protein | |||
| 6240 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyR3bORF6240P |
| 6245 | exodeoxyribonuclease VII large subunit | |||
| 7075 | alpha-1,2-fucosyltransferase | |||
| ??? | M | M.HpyR3cORF7075P (100% identity) | M.HpyR3bORF7080P | |
| 7095 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7285 | restriction endonuclease | |||
| 7290 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyR3bORF7295P |
| 7295 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyR3bORF7295P |
| 7300 | restriction endonuclease | |||
| 7295 | restriction endonuclease | |||
| 7300 | R | restriction endonuclease | CCTC | HpyR3bORF7305P |
| 7305 | DNA (cytosine-5-)-methyltransferase | |||
| 7310 | M | site-specific DNA-methyltransferase | CCTC | M2.HpyR3bORF7305P |
| 7315 | agmatine deiminase | |||
| 7315 | agmatine deiminase | |||
| 7320 | RM | HpyR3cORF7315P (100% identity) | HpyR3bORF7320P | |
| 7325 | nicotinate-nucleotide diphosphorylase | |||
| 7520 | glycosyltransferase family 8 protein | |||
| 7525 | M | M.HpyR3cORF7520P (100% identity) | M.HpyR3bORF7525P | |
| 7530 | site-specific DNA-methyltransferase | |||
| 8065 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyR3bORF8075P |
| 8075 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyR3bORF8075P |
| 8080 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 40 | ATP-dependent DNA helicase RecG | |||
| 45 | M | M.HpyR3cORF45P (100% identity) | M.HpyR3bORF45P | |
| 50 | R | HpyR3cORF45P (100% identity) | HpyR3bORF45P | |
| 55 | restriction endonuclease | |||
| 7375 | DNA-binding response regulator | |||
| 7380 | M | M.HpyR3cORF7375P (100% identity) | M.HpyR3bORF7380P | |
| 7385 | R | HpyR3cORF7375P (100% identity) | HpyR3bORF7380P | |
| 7390 | rod shape-determining protein MreC | |||
| 7440 | DNA/RNA non-specific endonuclease | |||
| 7445 | M | M.HpyR3cORF7440P (100% identity) | M.HpyR3bORF7445P | |
| 7450 | R | HpyR3cORF7440P (100% identity) | HpyR3bORF7445P | |
| 7455 | biotin synthase | |||