Helicobacter pylori B128_1 |
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Putative Helicobacter pylori B128_1 RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,002 bp
GenBank #: CP019700
REBASE acronym: HpyB1281
Org_num: 27768
All begin BXP01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 505 | formyltetrahydrofolate deformylase | |||
| 510 | S | S.HpyR3cORF510P (100% identity) | S.HpyB1281ORF510P | |
| 515 | nickel transporter | |||
| 4775 | 0 aa hypothetical protein | |||
| 4780 | S | S.HpyR3cORF4785P (100% identity) | S.HpyB1281ORF4780P | |
| 4785 | cadmium-translocating P-type ATPase | |||
| 5060 | hydroxyethylthiazole kinase | |||
| 5065 | R | HpyR3cORF5080P (100% identity) | HpyB1281ORF5075P | |
| 5070 | S | S.HpyR3cORF5080P (99% identity) | S.HpyB1281ORF5075P | |
| 5075 | M | M.HpyR3cORF5080P (100% identity) | M.HpyB1281ORF5075P | |
| 5080 | DNA (cytosine-5-)-methyltransferase | |||
| 5355 | 631 aa hypothetical protein | |||
| 5360 | R | HpyR3cORF5365P (100% identity) | HpyB1281ORF5365P | |
| 5365 | M | M.HpyR3cORF5365P (100% identity) | M.HpyB1281ORF5365P | |
| 5370 | S | S.Hpy128713ORF5350P (100% identity) | S.HpyB1281ORF5365P | |
| 5380 | RNA degradosome polyphosphate kinase | |||
| 8145 | metal-dependent hydrolase | |||
| 8150 | R | HpyR3cORF8160P (100% identity) | HpyB1281ORF8155P | |
| 8155 | M | M.HpyR3cORF8160P (100% identity) | M.HpyB1281ORF8155P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyB1281ORF8155P | |
| 8170 | thymidylate synthase (FAD) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | DEAD/DEAH box helicase | |||
| 60 | RM | HpyR3cORF55P (99% identity) | HpyB1281ORF60P | |
| 65 | 145 aa hypothetical protein | |||
| 140 | 388 aa hypothetical protein | |||
| 145 | R | HpyR3cORF145P (100% identity) | CCATC | HpyB1281ORF150P |
| 150 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M2.HpyB1281ORF150P |
| 155 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M1.HpyB1281ORF150P |
| 160 | permease | |||
| 285 | amidophosphoribosyltransferase | |||
| 290 | RM | HpyR3cORF285P (100% identity) | HpyB1281ORF290P | |
| ??? | S | S.HpyR3cORF285P (100% identity) | S.HpyB1281ORF290P | |
| 305 | DNA polymerase I | |||
| 585 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | Hpy713KORF570P (100% identity) | HpyB1281ORF590P | |
| 605 | peptidase S41 | |||
| 1310 | serine acetyltransferase | |||
| ??? | R | HpyB8ORF281P (100% identity) | CATG | HpyB1281ORF1325P |
| 1325 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyB1281ORF1325P |
| 1330 | hydrolase | |||
| 1505 | purine-nucleoside phosphorylase | |||
| ??? | R | HpyU408XP (100% identity) | TCNGA | HpyB1281ORF1515P |
| 1515 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyB1281ORF1515P |
| 1520 | 640 aa hypothetical protein | |||
| 1795 | flagellar biosynthesis protein FlgM | |||
| 1800 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyB1281ORF1800P |
| 1805 | 144 aa hypothetical protein | |||
| 1990 | Laminin subunit alpha-2 precursor | |||
| 1995 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyB1281ORF2000P |
| 2000 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyB1281ORF2000P |
| 2005 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3075 | ATP-dependent DNA helicase | |||
| 3080 | M | M.HpyB128KORF6730P (100% identity) | GTNNAC | M.HpyB1281ORF3080P |
| 3085 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB1281ORF3080P |
| 3090 | flagellar hook protein FlgE | |||
| 3320 | DNA gyrase subunit B | |||
| 3325 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyB1281ORF3325P |
| 3330 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyB1281ORF3325P |
| 3335 | 406 aa hypothetical protein | |||
| 4170 | glycerol-3-phosphate dehydrogenase | |||
| 4175 | RM | helicase | HpyB1281ORF4175AP | |
| 4180 | RM | HpyR3cORF4175P (60% identity) | HpyB1281ORF4175BP | |
| 4185 | 0 aa hypothetical protein | |||
| 5075 | type I restriction-modification system subunit | |||
| 5080 | M | M.HpyR3cORF5085P (99% identity) | M.HpyB1281ORF5080P | |
| 5085 | R | HpyR3cORF5085P (100% identity) | HpyB1281ORF5080P | |
| 5090 | phosphatase PAP2 family protein | |||
| 5250 | 0 aa hypothetical protein | |||
| 5255 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyB1281ORF5260P |
| 5260 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyB1281ORF5260P |
| 5265 | restriction endonuclease | |||
| 5260 | DNA (cytosine-5-)-methyltransferase | |||
| 5265 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyB1281ORF5270P |
| 5270 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyB1281ORF5270P |
| 5275 | GTP-binding protein TypA | |||
| 5280 | glycosyltransferase 9 family protein | |||
| 5285 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyB1281ORF5285P |
| 5290 | 366 aa hypothetical protein | |||
| 6220 | ATP-dependent chaperone ClpB | |||
| 6225 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyB1281ORF6225P |
| 6230 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyB1281ORF6225P |
| 6235 | 198 aa hypothetical protein | |||
| 6235 | 198 aa hypothetical protein | |||
| 6240 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyB1281ORF6240P |
| 6245 | exodeoxyribonuclease VII large subunit | |||
| 7070 | alpha-1,2-fucosyltransferase | |||
| 7075 | M | M.HpyR3cORF7075P (90% identity) | M.HpyB1281ORF7075P | |
| 7080 | 356 aa hypothetical protein | |||
| 7280 | type II DNA modification enzyme | |||
| 7285 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyB1281ORF7290P |
| 7290 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyB1281ORF7290P |
| 7295 | restriction endonuclease | |||
| 7290 | restriction endonuclease | |||
| 7295 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyB1281ORF7300P |
| 7300 | DNA (cytosine-5-)-methyltransferase | |||
| 7305 | M | M2.HpyR3cORF7300P (99% identity) | CCTC | M2.HpyB1281ORF7300P |
| 7310 | agmatine deiminase | |||
| 7305 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyB128KORFAP (100% identity) | M.HpyB1281ORFAP | |
| ??? | 1166 aa hypothetical protein HMPREF1402_00656 | |||
| ??? | 107 aa hypothetical protein BB437_07770 | |||
| ??? | RM | HpyR3cORF7315P (99% identity) | HpyB1281ORF7320P | |
| 7325 | nicotinate-nucleotide diphosphorylase | |||
| 7520 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7525 | M | M.HpyR3cORF7520P (100% identity) | GAATTC | M.HpyB1281ORF7525P |
| 7530 | site-specific DNA-methyltransferase | |||
| 8060 | translation elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyB1281ORF8070P |
| 8070 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyB1281ORF8070P |
| 8075 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 40 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyB128ORF79P (100% identity) | M.HpyB1281ORF45P | |
| 55 | R | HpyR3cORF45P (100% identity) | HpyB1281ORF45P | |
| 60 | restriction endonuclease | |||
| 7375 | DNA-binding response regulator | |||
| 7380 | M | M.HpyR3cORF7375P (100% identity) | M.HpyB1281ORF7380P | |
| 7385 | R | HpyR3cORF7375P (100% identity) | HpyB1281ORF7380P | |
| 7390 | rod shape-determining protein MreC | |||
| 7375 | DNA-binding response regulator | |||
| 7380 | M | M.HpyR3cORF7375P (100% identity) | M.HpyB1281ORF7385P | |
| 7385 | R | HpyR3cORF7375P (100% identity) | HpyB1281ORF7385P | |
| 7390 | rod shape-determining protein MreC | |||
| 7440 | endonuclease | |||
| 7445 | M | M.HpyR3cORF7440P (100% identity) | M.HpyB1281ORF7445P | |
| 7450 | R | HpyR3cORF7440P (99% identity) | HpyB1281ORF7445P | |
| 7455 | biotin synthase | |||