Vibrio cholerae O1 biovar El Tor HC1037 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Vibrio cholerae O1 biovar El Tor HC1037 RM systems
Ref: Duncan,M.C. et al. unpublished
REBASE ref # 26197
| Sequence length: | GenBank #: | |
| chromosome I: | 3,015,116 bp | CP026647 |
| chromosome II: | 1,046,303 bp | CP026648 |
REBASE acronym: Vch1037
Org_num: 27688
All begin C4E16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 6100 | 706 aa hypothetical protein | |||
| 6105 | R | VchW413ORF6655P (100% identity) | AAGNNNNNNCATC | Vch1037ORF6125P |
| 6110 | DUF262 domain-containing protein | |||
| 6115 | DUF262 domain-containing protein | |||
| 6120 | S | S.VchW413ORF6655P (100% identity) | AAGNNNNNNCATC | S.Vch1037ORF6125P |
| 6125 | M | M.VspNIH41ORF1746P (100% identity) | AAGNNNNNNCATC | M.Vch1037ORF6125P |
| 6130 | 687 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 10285 | ribulose-phosphate 3-epimerase | |||
| 10290 | M | M.VspNIH41DamP (100% identity) | GATC | M.Vch1037DamP |
| 10295 | cell division protein DamX | |||
| chromosome II | ||||
| 14970 | hemagglutinin | |||
| 14975 | M | M.VspNIH41ORF3529P (100% identity) | M.Vch1037ORF14975P | |
| 14980 | 141 aa hypothetical protein | |||
| 19110 | guanosine monophosphate reductase | |||
| 19115 | M | M.VspNIH41ORF700P (100% identity) | RCCGGY | M.Vch1037ORF19115P |
| 19120 | DUF262 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 1470 | NERD domain-containing protein | |||
| 1475 | R | Vch223ORF13130P (100% identity) | Vch1037ORF1475P | |
| 1480 | class I SAM-dependent methyltransferase | |||