Helicobacter pylori 7.13_1 |
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Putative Helicobacter pylori 7.13_1 RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,115 bp
GenBank #: CP023267
REBASE acronym: Hpy7131
Org_num: 27690
All begin BXP18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 495 | formyltetrahydrofolate deformylase | |||
| 500 | S | S.HpyR3cORF510P (100% identity) | S.Hpy7131ORF500P | |
| 505 | nickel transporter | |||
| 4780 | 0 aa hypothetical protein | |||
| 4785 | S | S.HpyR3cORF4785P (100% identity) | S.Hpy7131ORF4785P | |
| 4790 | cadmium-translocating P-type ATPase | |||
| 5065 | hydroxyethylthiazole kinase | |||
| 5070 | R | HpyR3cORF5080P (100% identity) | Hpy7131ORF5080P | |
| 5075 | S | S.HpyR3cORF5080P (100% identity) | S.Hpy7131ORF5080P | |
| 5080 | M | M.HpyR3cORF5080P (100% identity) | M.Hpy7131ORF5080P | |
| 5085 | DNA (cytosine-5-)-methyltransferase | |||
| 5355 | DUF115 domain-containing protein | |||
| 5360 | R | HpyD1cORF5360P (100% identity) | Hpy7131ORF5365P | |
| 5365 | M | M.HpyR3cORF5365P (100% identity) | M.Hpy7131ORF5365P | |
| ??? | S | S.HpyR3cORF5365P (100% identity) | S.Hpy7131ORF5365P | |
| 5380 | RNA degradosome polyphosphate kinase | |||
| 8145 | M48 family peptidase | |||
| 8150 | R | HpyR3cORF8160P (100% identity) | Hpy7131ORF8155P | |
| 8155 | M | M.HpyR3cORF8160P (100% identity) | M.Hpy7131ORF8155P | |
| ??? | S | S.HpyB128ORF3P (100% identity) | S.Hpy7131ORF8155P | |
| 8170 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpyR3cORF55P (100% identity) | Hpy7131ORF50P | |
| 55 | DUF4065 domain-containing protein | |||
| 130 | 388 aa hypothetical protein | |||
| 135 | R | HpyR3cORF145P (100% identity) | CCATC | Hpy7131ORF140P |
| 140 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M2.Hpy7131ORF140P |
| 145 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M1.Hpy7131ORF140P |
| 150 | YjgP/YjgQ family permease | |||
| 275 | amidophosphoribosyltransferase | |||
| 280 | RM | HpyR3cORF285P (100% identity) | Hpy7131ORF280P | |
| ??? | S | S.HpyR3cORF285P (100% identity) | S.Hpy7131ORF280P | |
| 295 | DNA polymerase I | |||
| 1300 | serine acetyltransferase | |||
| ??? | R | HpyR3cORF1320P (100% identity) | CATG | Hpy7131ORF1310P |
| 1310 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.Hpy7131ORF1310P |
| 1315 | HAD family hydrolase | |||
| 1490 | purine-nucleoside phosphorylase | |||
| 1495 | R | HpyU408XP (100% identity) | TCNGA | Hpy7131ORF1500P |
| 1500 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.Hpy7131ORF1500P |
| 1505 | 69 aa hypothetical protein | |||
| 1785 | flagellar biosynthesis protein FlgM | |||
| 1790 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.Hpy7131ORF1790P |
| 1795 | 144 aa hypothetical protein | |||
| 1975 | Laminin subunit alpha-2 precursor | |||
| 1980 | R | HpyR3cORF1995P (100% identity) | TCNNGA | Hpy7131ORF1985P |
| 1985 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.Hpy7131ORF1985P |
| 1990 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3075 | ATP-dependent helicase | |||
| 3080 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.Hpy7131ORF3080P |
| 3085 | R | HpyU437IXP (100% identity) | GTNNAC | Hpy7131ORF3080P |
| 3090 | flagellar hook protein FlgE | |||
| 3310 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3315 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.Hpy7131ORF3315P |
| 3320 | R | HpyR3cORF3315P (100% identity) | GTAC | Hpy7131ORF3315P |
| 3325 | endopeptidase | |||
| 4170 | glycerol-3-phosphate dehydrogenase | |||
| 4175 | RM | HpyR3cORF4175P (100% identity) | Hpy7131ORF4175P | |
| 4180 | 0 aa hypothetical protein | |||
| 5080 | type I restriction-modification system subunit | |||
| 5085 | M | M.HpyR3cORF5085P (100% identity) | M.Hpy7131ORF5085P | |
| 5090 | R | HpyR3cORF5085P (100% identity) | Hpy7131ORF5085P | |
| 5095 | phosphatase PAP2 family protein | |||
| 5250 | hypothetical protein | |||
| 5255 | R | HpyR3cORF5260P (100% identity) | ACGT | Hpy7131ORF5260P |
| 5260 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.Hpy7131ORF5260P |
| 5265 | restriction endonuclease | |||
| 5260 | DNA (cytosine-5-)-methyltransferase | |||
| 5265 | R | HpyR3cORF5270P (100% identity) | ACNGT | Hpy7131ORF5270P |
| 5270 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.Hpy7131ORF5270P |
| 5275 | translational GTPase TypA | |||
| 5280 | glycosyltransferase 9 family protein | |||
| 5285 | M | M.HpyU423II (100% identity) | ATTAAT | M.Hpy7131ORF5285P |
| 5290 | hypothetical protein | |||
| 6215 | ATP-dependent chaperone ClpB | |||
| 6220 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.Hpy7131ORF6220P |
| 6225 | R | HpyR3cORF6220P (100% identity) | CCGG | Hpy7131ORF6220P |
| 6230 | hypothetical protein | |||
| 6230 | hypothetical protein | |||
| 6235 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.Hpy7131ORF6235P |
| 6240 | exodeoxyribonuclease VII large subunit | |||
| 7065 | alpha-1,2-fucosyltransferase | |||
| 7070 | M | M.HpyR3cORF7075P (90% identity) | M.Hpy7131ORF7070P | |
| 7075 | 356 aa hypothetical protein | |||
| 7275 | type II restriction endonuclease | |||
| 7280 | R | HpyR3cORF7290P (100% identity) | GTSAC | Hpy7131ORF7285P |
| 7285 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.Hpy7131ORF7285P |
| 7290 | restriction endonuclease | |||
| 7285 | restriction endonuclease | |||
| 7290 | R | HpyR3cORF7300P (100% identity) | CCTC | Hpy7131ORF7295P |
| 7295 | DNA (cytosine-5-)-methyltransferase | |||
| 7300 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.Hpy7131ORF7295P |
| 7305 | agmatine deiminase | |||
| 7305 | agmatine deiminase | |||
| 7310 | RM | HpyR3cORF7315P (100% identity) | Hpy7131ORF7310P | |
| 7315 | nicotinate-nucleotide diphosphorylase | |||
| 7510 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7515 | M | M.HpyR3cORF7520P (100% identity) | M.Hpy7131ORF7515P | |
| 7520 | site-specific DNA-methyltransferase | |||
| 8055 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | Hpy7131ORF8065P |
| 8065 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.Hpy7131ORF8065P |
| 8070 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyR3cORF45P (100% identity) | M.Hpy7131ORF40P | |
| 45 | R | HpyR3cORF45P (100% identity) | Hpy7131ORF40P | |
| 50 | restriction endonuclease | |||
| 7365 | DNA-binding response regulator | |||
| 7370 | M | M.HpyR3cORF7375P (100% identity) | M.Hpy7131ORF7370P | |
| 7375 | R | HpyR3cORF7375P (100% identity) | Hpy7131ORF7370P | |
| 7380 | rod shape-determining protein MreC | |||
| 7430 | endonuclease | |||
| 7435 | M | M.HpyR3cORF7440P (100% identity) | M.Hpy7131ORF7435P | |
| 7440 | R | HpyR3cORF7440P (100% identity) | Hpy7131ORF7435P | |
| 7445 | biotin synthase | |||