Helicobacter pylori 7.13_3 |
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Putative Helicobacter pylori 7.13_3 RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,350 bp
GenBank #: CP023265
REBASE acronym: Hpy7133
Org_num: 27696
All begin BXP20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 490 | formyltetrahydrofolate deformylase | |||
| 495 | S | S.HpyR3cORF510P (100% identity) | S.Hpy7133ORF495P | |
| 500 | nickel transporter | |||
| 4820 | 0 aa hypothetical protein | |||
| 4825 | S | S.HpyR3cORF4785P (100% identity) | S.Hpy7133ORF4825P | |
| 4830 | cadmium-translocating P-type ATPase | |||
| 5105 | hydroxyethylthiazole kinase | |||
| 5110 | R | HpyR3cORF5080P (100% identity) | Hpy7133ORF5120P | |
| 5115 | S | S.HpyR3cORF5080P (100% identity) | S.Hpy7133ORF5120P | |
| 5120 | M | M.HpyR3cORF5080P (100% identity) | M.Hpy7133ORF5120P | |
| 5125 | DNA (cytosine-5-)-methyltransferase | |||
| 5400 | DUF115 domain-containing protein | |||
| 5405 | R | HpyD1cORF5360P (99% identity) | Hpy7133ORF5410P | |
| 5410 | M | M.HpyR3cORF5365P (100% identity) | M.Hpy7133ORF5410P | |
| ??? | S | S.HpyR3cORF5365P (100% identity) | S.Hpy7133ORF5410P | |
| 5425 | RNA degradosome polyphosphate kinase | |||
| 8190 | M48 family peptidase | |||
| 8195 | R | HpyR3cORF8160P (100% identity) | Hpy7133ORF8200P | |
| 8200 | M | M.HpyR3cORF8160P (100% identity) | M.Hpy7133ORF8200P | |
| ??? | S | S.HpyB128ORF3P (100% identity) | S.Hpy7133ORF8200P | |
| 8215 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpyR3cORF55P (100% identity) | Hpy7133ORF50P | |
| 55 | DUF4065 domain-containing protein | |||
| 130 | 388 aa hypothetical protein | |||
| 135 | R | HpyR3cORF145P (100% identity) | CCATC | Hpy7133ORF140P |
| 140 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M2.Hpy7133ORF140P |
| 145 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M1.Hpy7133ORF140P |
| 150 | YjgP/YjgQ family permease | |||
| 275 | amidophosphoribosyltransferase | |||
| 280 | RM | HpyR3cORF285P (100% identity) | Hpy7133ORF280P | |
| ??? | S | S.HpyR3cORF285P (100% identity) | S.Hpy7133ORF280P | |
| 295 | DNA polymerase I | |||
| 565 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | HpyB8ORF127P (100% identity) | Hpy7133ORF570P | |
| 580 | type II restriction endonuclease | |||
| ??? | hypothetical protein | |||
| 580 | R | HpyB8ORF127P (40% identity) | Hpy7133ORF580P | |
| 585 | peptidase S41 | |||
| 1295 | serine acetyltransferase | |||
| ??? | R | HpyR3cORF1320P (100% identity) | CATG | Hpy7133ORF1305P |
| 1305 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.Hpy7133ORF1305P |
| 1310 | HAD family hydrolase | |||
| 1485 | purine-nucleoside phosphorylase | |||
| 1490 | R | HpyU408XP (100% identity) | TCNGA | Hpy7133ORF1495P |
| 1495 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.Hpy7133ORF1495P |
| 1500 | 69 aa hypothetical protein | |||
| 1780 | flagellar biosynthesis protein FlgM | |||
| 1785 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.Hpy7133ORF1785P |
| 1790 | 0 aa hypothetical protein | |||
| 1970 | Laminin subunit alpha-2 precursor | |||
| 1975 | R | HpyR3cORF1995P (100% identity) | TCNNGA | Hpy7133ORF1980P |
| 1980 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.Hpy7133ORF1980P |
| 1985 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3070 | ATP-dependent helicase | |||
| 3075 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.Hpy7133ORF3075P |
| 3080 | R | HpyU437IXP (100% identity) | GTNNAC | Hpy7133ORF3075P |
| 3085 | flagellar hook protein FlgE | |||
| 3305 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3310 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.Hpy7133ORF3310P |
| 3315 | R | HpyR3cORF3315P (100% identity) | GTAC | Hpy7133ORF3310P |
| 3320 | endopeptidase | |||
| 4210 | hypothetical protein | |||
| 4215 | RM | HpyR3cORF4175P (78% identity) | Hpy7133ORF4205P | |
| 4220 | hypothetical protein | |||
| 5120 | type I restriction-modification system subunit | |||
| 5125 | M | M.HpyR3cORF5085P (100% identity) | M.Hpy7133ORF5125P | |
| 5130 | R | HpyR3cORF5085P (100% identity) | Hpy7133ORF5125P | |
| 5135 | phosphatase PAP2 family protein | |||
| 5290 | hypothetical protein | |||
| 5295 | R | HpyR3cORF5260P (100% identity) | ACGT | Hpy7133ORF5300P |
| 5300 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.Hpy7133ORF5300P |
| ??? | hypothetical protein | |||
| 5300 | DNA (cytosine-5-)-methyltransferase | |||
| ??? | R | hypothetical protein | ACNGT | Hpy7133ORF5315P |
| 5315 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.Hpy7133ORF5315P |
| 5320 | translational GTPase TypA | |||
| 5325 | glycosyltransferase 9 family protein | |||
| 5330 | M | M.HpyU423II (96% identity) | M.Hpy7133ORF5330P | |
| 5335 | hypothetical protein | |||
| 6260 | ATP-dependent chaperone ClpB | |||
| 6265 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.Hpy7133ORF6265P |
| 6270 | R | HpyR3cORF6220P (100% identity) | CCGG | Hpy7133ORF6265P |
| 6275 | hypothetical protein | |||
| 6275 | hypothetical protein | |||
| 6280 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.Hpy7133ORF6280P |
| 6285 | exodeoxyribonuclease VII large subunit | |||
| 7110 | alpha-1,2-fucosyltransferase | |||
| ??? | M | M.HpyR3cORF7075P (100% identity) | M.Hpy7133ORF7115P | |
| 7130 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7320 | type II restriction endonuclease | |||
| 7325 | R | HpyR3cORF7290P (100% identity) | GTSAC | Hpy7133ORF7330P |
| 7330 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.Hpy7133ORF7330P |
| 7335 | restriction endonuclease | |||
| 7330 | restriction endonuclease | |||
| 7335 | R | HpyR3cORF7300P (100% identity) | CCTC | Hpy7133ORF7340P |
| 7340 | DNA (cytosine-5-)-methyltransferase | |||
| 7345 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.Hpy7133ORF7340P |
| 7350 | agmatine deiminase | |||
| 7350 | agmatine deiminase | |||
| 7355 | RM | HpyR3cORF7315P (100% identity) | Hpy7133ORF7355P | |
| 7360 | nicotinate-nucleotide diphosphorylase | |||
| 7555 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7560 | M | M.HpyR3cORF7520P (100% identity) | M.Hpy7133ORF7560P | |
| 7565 | site-specific DNA-methyltransferase | |||
| 8100 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | Hpy7133ORF8110P |
| 8110 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.Hpy7133ORF8110P |
| 8115 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyR3cORF45P (100% identity) | M.Hpy7133ORF40P | |
| 45 | R | HpyR3cORF45P (100% identity) | Hpy7133ORF40P | |
| 50 | restriction endonuclease | |||
| 7410 | DNA-binding response regulator | |||
| 7415 | M | M.HpyR3cORF7375P (100% identity) | M.Hpy7133ORF7415P | |
| 7420 | R | HpyR3cORF7375P (100% identity) | Hpy7133ORF7415P | |
| 7425 | rod shape-determining protein MreC | |||
| 7475 | endonuclease | |||
| 7480 | M | M.HpyR3cORF7440P (100% identity) | M.Hpy7133ORF7480P | |
| 7485 | R | HpyR3cORF7440P (100% identity) | Hpy7133ORF7480P | |
| 7490 | biotin synthase | |||