|
Putative Helicobacter pylori B128_3 RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,070 bp
GenBank #: CP027021
REBASE acronym: HpyB1283
Org_num: 27707
All begin BXP17_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
490 | formyltetrahydrofolate deformylase | |||
495 | S | S.HpyR3cORF510P (100% identity) | S.HpyB1283ORF495P | |
500 | nickel transporter | |||
4770 | outer membrane beta-barrel protein HofF | |||
4775 | S | S.HpyR3cORF4785P (100% identity) | S.HpyB1283ORF4775P | |
4780 | cadmium-translocating P-type ATPase | |||
5055 | hydroxyethylthiazole kinase | |||
5060 | R | HpyR3cORF5080P (100% identity) | HpyB1283ORF5070P | |
5065 | S | S.HpyR3cORF5080P (100% identity) | S.HpyB1283ORF5070P | |
5070 | M | M.HpyR3cORF5080P (100% identity) | M.HpyB1283ORF5070P | |
5075 | type I restriction endonuclease | |||
5350 | DUF115 domain-containing protein | |||
5355 | R | HpyD1cORF5360P (100% identity) | HpyB1283ORF5360P | |
5360 | M | M.HpyR3cORF5365P (100% identity) | M.HpyB1283ORF5360P | |
??? | S | S.HpyR3cORF5365P (100% identity) | S.HpyB1283ORF5360P | |
5375 | RNA degradosome polyphosphate kinase | |||
8145 | M48 family peptidase | |||
8150 | R | HpyR3cORF8160P (100% identity) | HpyB1283ORF8155P | |
8155 | M | M.HpyR3cORF8160P (100% identity) | M.HpyB1283ORF8155P | |
??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyB1283ORF8155P | |
8170 | 0 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
45 | DEAD/DEAH box helicase | |||
50 | RM | HpyR3cORF55P (100% identity) | HpyB1283ORF50P | |
55 | DUF4065 domain-containing protein | |||
130 | outer membrane protein | |||
135 | R | HpyR3cORF145P (100% identity) | CCATC | HpyB1283ORF140P |
140 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M2.HpyB1283ORF140P |
145 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M1.HpyB1283ORF140P |
150 | YjgP/YjgQ family permease | |||
275 | ComF family protein | |||
280 | RM | HpyR3cORF285P (100% identity) | HpyB1283ORF280P | |
285 | S | S.HpyR3cORF285P (51% identity) | S1.HpyB1283ORF280P | |
290 | S | S2.HpyB128KORF280P (100% identity) | S2.HpyB1283ORF280P | |
295 | DNA polymerase I | |||
1300 | serine acetyltransferase | |||
??? | R | HpyB8ORF281P (100% identity) | CATG | HpyB1283ORF1315P |
1315 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyB1283ORF1315P |
1320 | HAD family hydrolase | |||
1495 | purine-nucleoside phosphorylase | |||
1500 | R | HpyU408XP (100% identity) | TCNGA | HpyB1283ORF1505P |
1505 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyB1283ORF1505P |
1510 | 640 aa hypothetical protein | |||
1795 | flagellar biosynthesis protein FlgM | |||
1800 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyB1283ORF1800P |
1805 | 144 aa hypothetical protein | |||
1995 | Laminin subunit alpha-2 precursor | |||
2000 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyB1283ORF2005P |
2005 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyB1283ORF2005P |
2010 | acetyl-CoA carboxylase biotin carboxylase | |||
3075 | ATP-dependent helicase | |||
3080 | M | M.HpyB128KORF6730P (100% identity) | GTNNAC | M.HpyB1283ORF3080P |
3085 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB1283ORF3080P |
3090 | flagellar hook protein FlgE | |||
3305 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
3310 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyB1283ORF3310P |
3315 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyB1283ORF3310P |
3320 | M23 family peptidase | |||
4165 | (Fe-S)-binding protein | |||
4170 | RM | HpyB1282ORF4165P (100% identity) | HpyB1283ORF4170P | |
4175 | 0 aa hypothetical protein | |||
5075 | type I restriction endonuclease | |||
5080 | M | M.HpyR3cORF5085P (100% identity) | M.HpyB1283ORF5080P | |
5085 | R | HpyR3cORF5085P (100% identity) | HpyB1283ORF5080P | |
5090 | phosphatase PAP2 family protein | |||
5245 | hypothetical protein | |||
5250 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyB1283ORF5255P |
5255 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyB1283ORF5255P |
5260 | restriction endonuclease | |||
5255 | DNA (cytosine-5-)-methyltransferase | |||
5260 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyB1283ORF5265P |
5265 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyB1283ORF5265P |
5270 | translational GTPase TypA | |||
5275 | lipopolysaccharide heptosyltransferase family | |||
5280 | M | M.HpySP702ORF3885P (97% identity) | ATTAAT | M.HpyB1283ORF5280P |
5285 | outer membrane beta-barrel protein | |||
6220 | ATP-dependent chaperone ClpB | |||
6225 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyB1283ORF6225P |
6230 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyB1283ORF6225P |
6235 | hypothetical protein | |||
6235 | hypothetical protein | |||
6240 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyB1283ORF6240P |
6245 | exodeoxyribonuclease VII large subunit | |||
7070 | alpha-1,2-fucosyltransferase | |||
??? | M | M.HpyR3cORF7075P (100% identity) | M.HpyB1283ORF7075P | |
7090 | [acyl-carrier-protein] S-malonyltransferase | |||
7285 | DNA cytosine methyltransferase | |||
7290 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyB1283ORF7295P |
7295 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyB1283ORF7295P |
7300 | restriction endonuclease | |||
7295 | restriction endonuclease | |||
7300 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyB1283ORF7305P |
7305 | DNA (cytosine-5-)-methyltransferase | |||
7310 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyB1283ORF7305P |
7315 | agmatine deiminase | |||
7315 | agmatine deiminase | |||
7320 | RM | HpyR3cORF7315P (100% identity) | HpyB1283ORF7320P | |
7325 | nicotinate-nucleotide diphosphorylase | |||
7520 | glycosyltransferase family 8 protein | |||
7525 | M | M.HpyB8ORF1574P (100% identity) | M.HpyB1283ORF7525P | |
7530 | site-specific DNA-methyltransferase | |||
8060 | elongation factor Ts | |||
??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyB1283ORF8070P |
8070 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyB1283ORF8070P |
8075 | 68 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
40 | M | M.HpyB128ORF79P (100% identity) | M.HpyB1283ORF40P | |
45 | R | HpyR3cORF45P (100% identity) | HpyB1283ORF40P | |
50 | class I SAM-dependent DNA methyltransferase | |||
7375 | DNA-binding response regulator | |||
7380 | M | M.HpyR3cORF7375P (100% identity) | M.HpyB1283ORF7380P | |
7385 | R | HpyR3cORF7375P (100% identity) | HpyB1283ORF7380P | |
7390 | rod shape-determining protein MreC | |||
7440 | DNA/RNA non-specific endonuclease | |||
7445 | M | M.HpyR3cORF7440P (100% identity) | M.HpyB1283ORF7445P | |
7450 | R | HpyR3cORF7440P (100% identity) | HpyB1283ORF7445P | |
7455 | biotin synthase |