Escherichia coli DTU-1 |
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Putative Escherichia coli DTU-1 RM systems
Ref: Ahrenfeldt,J. et al. BMC Genomics 18 (1), 19 (2017)
REBASE ref # 26133
Complete sequence: 4,456,672 bp
GenBank #: CP026612
REBASE acronym: EcoDTU1
Org_num: 27486
All begin C4J63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8365 | endoribonuclease SymE | |||
| 8370 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoDTU1ORF8375P |
| 8375 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoDTU1ORF8375P |
| ??? | R | Msa17ORFC2P (100% identity) | AACNNNNNNGTGC | EcoDTU1ORF8375P |
| 8385 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2365 | Fis family transcriptional regulator | |||
| 2370 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoDTU1ORF2370P |
| 2375 | DUF2556 domain-containing protein | |||
| 3035 | ribulose-phosphate 3-epimerase | |||
| 3040 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoDTU1DamP |
| 3045 | protein DamX | |||
| 18410 | drug/metabolite exporter YedA | |||
| 18415 | V | V.SflFF64DcmP (100% identity) | V.EcoDTU1DcmP | |
| 18420 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoDTU1DcmP |
| 18425 | phosphohydrolase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8350 | 906 aa hypothetical protein | |||
| 8355 | R | SenHNK130McrCP (100% identity) | EcoDTU1McrCP | |
| 8360 | R | SenHNK130McrBP (100% identity) | EcoDTU1McrBP | |
| 8365 | endoribonuclease SymE | |||
| ??? | type I restriction-modification system deoxyribonuclease | |||
| 8385 | R | SenHNK130MrrP (100% identity) | EcoDTU1MrrP | |
| 8390 | GTPase | |||