Gamma proteobacterium HdN1 |
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Putative Gamma proteobacterium HdN1 RM systems
Ref: Widdel,F. et al. Environ. Microbiol. (2010) In press
REBASE ref # 11913
Complete sequence: 4,587,455 bp
GenBank #: FP929140 (NC_014366)
REBASE acronym: GprH
Org_num: 6122
All begin HDN1F_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3990 | Excisionase, phage related | |||
| 4000 | M | M.Pre393ORF2750P (96% identity) | M.GprHORF4000P | |
| 4010 | S | S.Vvu10ORF10880P (49% identity) | S.GprHORF4000P | |
| 4020 | ATP-dependent DNA helicase | |||
| 4030 | predicted Rossmann fold nucleotide-binding | |||
| 4040 | R | Cor1662TORF3995P (97% identity) | GprHORF4000P | |
| 4050 | 247 aa hypothetical protein | |||
| 7420 | transposase, fragment | |||
| 7430 | M | M.Tte58ORF18480P (84% identity) | M.GprHORF7430P | |
| 7440 | S | S.Asp21233IV (55% identity) | S.GprHORF7430P | |
| 7450 | Protein of unknown function (DUF1016) | |||
| 7460 | R | Asp21233IVP (94% identity) | GprHORF7430P | |
| 7470 | Methyl-accepting chemotaxis protein | |||
| 11590 | 304 aa Conserved hypothetical protein | |||
| 11600 | M | M.HspKA22ORF5245P (96% identity) | M.GprHORF11600P | |
| ??? | S | S.Pmi1092ORF12605P (56% identity) | S.GprHORF11600P | |
| 11630 | 394 aa Conserved hypothetical protein | |||
| 11640 | RlfA protein, possibly associated with | |||
| 11650 | RlfB protein, possibly associated with | |||
| 11660 | R | HspKA22ORF5245P (97% identity) | GprHORF11600P | |
| 11670 | 261 aa Conserved hypothetical protein | |||
| 15150 | R | Mge961ORF7820P (91% identity) | GprHORF15160P | |
| 15160 | M | M.Mge961ORF7820P (90% identity) | M.GprHORF15160P | |
| 15170 | Protein of unknown function DUF1016 | |||
| 15180 | S | S.AalSMS7III (14% identity) | S.GprHORF15160P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7080 | 178 aa hypothetical protein | |||
| 7090 | RM | Psp8385ORF8000P (48% identity) | GprHORF7090P | |
| 7100 | 343 aa conserved hypothetical protein | |||
| 19580 | 351 aa Hypothetical protein | |||
| 19590 | M | M.SspTTNORF159P (65% identity) | CCGCGG | M.GprHORF19590P |
| 19600 | R | Tbo703ORF20360P (67% identity) | CCGCGG | GprHORF19590P |
| 19610 | Transposase, probably fragment | |||
| 20970 | DSBA oxidoreductase | |||
| 20980 | RM | Bmu1185ORF6715P (81% identity) | GprHORF20980P | |
| 20990 | 203 aa Hypothetical protein | |||
| 29030 | Protein kinase | |||
| 29040 | S | S.Cpo738ORF9765P (67% identity) | S.GprHORF29050P | |
| 29050 | M | M1.MhyIRE31ORF1415P (83% identity) | M.GprHORF29050P | |
| 29060 | Type I restriction-modification system, | |||
| 29050 | Type I restriction-modification system, | |||
| 29060 | M | M2.GsuAM1ORF17900P (91% identity) | M.GprHORF29060P | |
| 29070 | Probable excisionase/Xis, DNA-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8370 | Protein of unknown function DUF1016 | |||
| ??? | M | M.Dba51ORF12945P (70% identity) | M.GprHORF8380P | |
| 8400 | 206 aa Hypothetical protein | |||
| 8410 | 351 aa conserved hypothetical protein | |||
| 8420 | R | BpsP21885ORF525P (81% identity) | GprHORF8380P | |
| 8430 | predicted uncharacterized FAD-dependent | |||
| 22910 | 282 aa Hypothetical protein | |||
| 22920 | M | M.AspMW2ORF146P (46% identity) | M.GprHORF22920P | |
| 22930 | R | MmaS8ORF1720P (94% identity) | GprHORF22920P | |
| 22940 | 624 aa Conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30000 | 63 aa hypothetical protein | |||
| 30010 | R | MspRZ01ORFFP (49% identity) | GprHMcrAP | |
| 30020 | Integrase, catalytic region | |||