Helicobacter pylori dRdM2addM2 |
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Putative Helicobacter pylori dRdM2addM2 RM systems
Ref: Kumar,S. et al. unpublished
REBASE ref # 27436
Complete sequence: 1,668,735 bp
GenBank #: CP026515
REBASE acronym: HpyAf
Org_num: 31771
All begin C2844_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2390 | 159 aa hypothetical protein | |||
| 2395 | S | S.HpyS299ORF3810P (100% identity) | S.HpyAfORF463P | |
| 2400 | type I restriction endonuclease subunit M | |||
| 2405 | M | M.HpyS299ORF3810P (100% identity) | M.HpyAfORF463P | |
| 2410 | R | HpyAeORF463P (100% identity) | HpyAfORF463P | |
| 2415 | DUF115 domain-containing protein | |||
| 4025 | 48 aa hypothetical protein | |||
| 4030 | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.HpyAfXIIIP |
| 4035 | cadmium, zinc and cobalt-transporting ATPase | |||
| 4320 | type I restriction endonuclease subunit R | |||
| ??? | S | S.HpyRif2ORF4365P (100% identity) | S.HpyAfORF848P | |
| 4330 | type I restriction-modification system subunit | |||
| 7290 | M48 family peptidase | |||
| 7295 | R | HpyS299ORF7180P (100% identity) | HpyAfORF1403P | |
| 7300 | M | M.HpyS299ORF7180P (100% identity) | M.HpyAfORF1403P | |
| 7305 | S | S.HpyS299ORF7180P (100% identity) | S.HpyAfORF1403P | |
| 7310 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 265 | agmatine deiminase | |||
| 270 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyAfVIP |
| 275 | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyAfVIP |
| ??? | R | HpyRif1ORF230P (100% identity) | CCTC | HpyAfVIP |
| 285 | restriction endonuclease | |||
| 280 | restriction endonuclease | |||
| 285 | R | HpyS299VIIIP (100% identity) | CCTTC | HpyAfVP |
| 290 | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyAfV |
| 295 | sodium/proline symporter PutP | |||
| 480 | [acyl-carrier-protein] S-malonyltransferase | |||
| 490 | R | HpyS299VP (100% identity) | GATC | HpyAfIIIP |
| 495 | M | M.HpyS299V (100% identity) | GATC | M.HpyAfIIIP |
| 500 | alpha-1,2-fucosyltransferase | |||
| 1340 | exodeoxyribonuclease VII large subunit | |||
| 1345 | M | M.HpyS299VII (100% identity) | TCGA | M.HpyAfXP |
| 1350 | 132 aa hypothetical protein | |||
| 1350 | 132 aa hypothetical protein | |||
| 1355 | R | HpyS299ORF4845P (100% identity) | CCGG | HpyAfORF263P |
| 1360 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyAfORF263P |
| 1365 | chaperone protein ClpB | |||
| 1895 | Laminin subunit alpha-2 precursor | |||
| 1900 | R | HpyRif2ORF1870P (100% identity) | HpyAfORF369P | |
| 1905 | M | M.HpyS299ORF4305P (100% identity) | M.HpyAfORF369P | |
| 1910 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2485 | outer membrane protein | |||
| 2490 | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyAfVIIP |
| 2495 | lipopolysaccharide heptosyltransferase family | |||
| 2500 | translational GTPase TypA | |||
| ??? | M | M.HpyRif2ORFEP (100% identity) | ACNGT | M.HpyAfORF481P |
| 2510 | R | HpyRif2ORFEP (100% identity) | ACNGT | HpyAfORF481P |
| 2515 | DNA (cytosine-5-)-methyltransferase | |||
| 2510 | 170 aa hypothetical protein | |||
| ??? | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyAfORF483P |
| 2520 | R | HpyS299ORF3700P (100% identity) | HpyAfORF483P | |
| 2525 | catalase | |||
| 2615 | DNA gyrase subunit B | |||
| ??? | M | M.HpyRif2ORFDP (100% identity) | GTAC | M.HpyAfORF503P |
| ??? | R | HpyRif2ORFDP (100% identity) | GTAC | HpyAfORF503P |
| 2630 | M23 family peptidase | |||
| 3445 | (Fe-S)-binding protein | |||
| 3450 | RM | HpyRif2ORFGP (100% identity) | GGANNAG | HpyAfXVIIIP |
| 3455 | 449 aa hypothetical protein | |||
| 4645 | flagellar hook protein FlgE | |||
| 4650 | R | HpyS299ORF1570P (100% identity) | GTNNAC | HpyAfIXP |
| 4655 | M | M.HpyS299ORF1570P (100% identity) | GTNNAC | M.HpyAfIXP |
| 4660 | ATP-dependent DNA helicase | |||
| 4905 | aminoglycoside O-phosphotransferase | |||
| 4910 | M | M2.HpySWT04XIII (100% identity) | M.HpyAfORF4910P | |
| 4915 | nitroreductase | |||
| 5800 | 144 aa hypothetical protein | |||
| 5805 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyAfVIIIP |
| 5810 | flagellar biosynthesis protein FlgM | |||
| 6280 | HAD family hydrolase | |||
| 6285 | M | M.HpyS299I (100% identity) | CATG | M.HpyAfI |
| 6290 | R | HpyS299IP (100% identity) | CATG | HpyAfIP |
| 6295 | serine acetyltransferase | |||
| 7025 | S41 family peptidase | |||
| 7030 | R | HpyS299ORF8615P (100% identity) | GANTC | HpyAfIVP |
| 7035 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyAfIVP |
| 7040 | DNA methyltransferase | |||
| 7035 | site-specific DNA-methyltransferase | |||
| 7040 | RM | HpyP21ORFGP (100% identity) | CRTTAA | HpyAfXVIP |
| 7045 | nicotinate-nucleotide pyrophosphorylase | |||
| 7665 | DNA polymerase I | |||
| ??? | S | S1.HpyP22ORFDP (100% identity) | S.HpyAfORF7675P | |
| 7675 | RM | HpyS299ORF6805P (100% identity) | HpyAfORF7675P | |
| 7680 | ComF family protein | |||
| 7885 | 179 aa hypothetical protein | |||
| ??? | RM | HpyRif2ORFAP (100% identity) | GCGTA | HpyAfXIVP |
| 7900 | 0 aa hypothetical protein | |||
| 7980 | IS200/IS605 family transposase | |||
| 7985 | M | M.HpyRif2ORF7965P (100% identity) | M.HpyAfORF1537P | |
| 7990 | R | HpyS299ORF6490P (100% identity) | HpyAfORF1537P | |
| 7995 | 60 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3070 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 3075 | R | HpyS299VIP (100% identity) | GCAG | HpyAfXIP |
| 3080 | M | M.HpyS299VI (100% identity) | GCAG | M.HpyAfXIP |
| 3085 | 54 aa hypothetical protein | |||
| 7900 | 0 aa hypothetical protein | |||
| 7905 | R | HpyS299ORF6570P (100% identity) | HpyAfORF1522P | |
| 7910 | M | M.HpyS299ORF6570P (100% identity) | M.HpyAfORF1522P | |
| 7915 | ATP-dependent DNA helicase RecG | |||