Escherichia coli CRE1540 |
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Putative Escherichia coli CRE1540 RM systems
Ref: Ho,P.L. et al. unpublished
REBASE ref # 25539
| Sequence length: | GenBank #: | |
| Chromosome: | 4,942,719 bp | CP019051 |
| plasmid p1540-2: | 155,802 bp | CP019053 |
| plasmid p1540-3: | 116,028 bp | CP019054 |
REBASE acronym: Eco1540
Org_num: 26969
All begin BVL39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3640 | 128 aa hypothetical protein | |||
| 3645 | M | M.EcosC41ORF5210P (100% identity) | GCAGNNNNNTGT | M.Eco1540ORF3645P |
| 3650 | S | S.EcosC41ORF5210P (98% identity) | GCAGNNNNNTGT | S.Eco1540ORF3645P |
| 3655 | 428 aa hypothetical protein | |||
| 11740 | transposase | |||
| 11745 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco1540ORF11750P |
| 11750 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco1540ORF11750P |
| 11755 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco1540ORF11750P |
| 11760 | 540 aa hypothetical protein | |||
| 18210 | 410 aa hypothetical protein | |||
| 18215 | M | M.EcoVEF10ORF18030P (100% identity) | M.Eco1540ORF18215P | |
| 18220 | S | S1.EcoVEF10ORF18030P (100% identity) | S.Eco1540ORF18215P | |
| 18225 | 227 aa hypothetical protein | |||
| 18230 | cold-shock protein | |||
| 18235 | R | EcoAH25ORF10605P (100% identity) | Eco1540ORF18215P | |
| 18240 | metal-dependent hydrolase | |||
| 23925 | 50S ribosome-binding GTPase | |||
| 23930 | M | M.EcoNT1N34ORFCP (93% identity) | ACANNNNNCTGC | M.Eco1540ORF23930P |
| 23935 | S | S.Eco61769ORF3410P (100% identity) | ACANNNNNCTGC | S.Eco1540ORF23930P |
| 23940 | R | Eco19035ORF3645P (100% identity) | ACANNNNNCTGC | Eco1540ORF23930P |
| 23945 | IS5 family transposase | |||
| plasmid p1540-3 | ||||
| 27580 | 3-phosphatase | |||
| 27585 | R | KpnLL83ORF1P (100% identity) | Eco1540ORF27595P | |
| 27590 | S | S.SspS13ORF175P (100% identity) | S.Eco1540ORF27595P | |
| 27595 | M | M.EcoAH25ORF15995P (100% identity) | M.Eco1540ORF27595P | |
| 27600 | prevent-host-death family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9170 | cell division protein DamX | |||
| 9175 | M | DNA adenine methylase | GATC | M.Eco1540DamP |
| 9180 | ribulose-phosphate 3-epimerase | |||
| 9755 | transporter | |||
| 9760 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco1540ORF9760P |
| 9765 | Fis family transcriptional regulator | |||
| 17835 | hydrolase | |||
| 17840 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco1540DcmP |
| 17845 | V | V.SflSTLE3DcmP (100% identity) | V.Eco1540DcmP | |
| 17850 | drug/metabolite exporter YedA | |||
| plasmid p1540-2 | ||||
| 27065 | 100 aa hypothetical protein | |||
| 27070 | M | M.YrupYR1ORFCP (100% identity) | M.Eco1540ORF27070P | |
| 27075 | 143 aa hypothetical protein | |||
| plasmid p1540-3 | ||||
| 27455 | recombination-associated protein RdgC | |||
| 27460 | M | M.EcoAH25ORF25285P (100% identity) | M.Eco1540ORF27460P | |
| 27475 | 63 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3625 | restriction endonuclease | |||
| 3630 | R | SflN101McrBP (100% identity) | Eco1540McrBP | |
| 3635 | R | Ecows53McrCP (100% identity) | Eco1540McrCP | |
| 3640 | 128 aa hypothetical protein | |||