Helicobacter pylori B8 |
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Putative Helicobacter pylori B8 RM systems
Ref: Farnbacher,M. et al. BMC Genomics 11 (1), 335 (2010)
REBASE ref # 11641
Complete sequence: 1,673,997 bp
GenBank #: FN598874 (NC_014256)
REBASE acronym: HpyB8
Org_num: 6074
All begin HPB8_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 107 | formyltetrahydrofolate deformylase | |||
| 108 | S | S.HpyR3cORF510P (100% identity) | S.HpyB8ORF108P | |
| 109 | 43 aa hypothetical protein predicted by | |||
| 997 | 34 aa hypothetical protein predicted by | |||
| 998 | S | S.HpyR3cORF4785P (100% identity) | S.HpyB8ORF998P | |
| 999 | Cadmium, zinc and cobalt-transporting ATPase | |||
| 1055 | hydroxyethylthiazole kinase | |||
| 1056 | R | HpyR3cORF5080P (100% identity) | HpyB8ORF1058P | |
| 1057 | S | S.HpyR3cORF5080P (100% identity) | S.HpyB8ORF1058P | |
| 1058 | M | M.HpyR3cORF5080P (100% identity) | M.HpyB8ORF1058P | |
| 1059 | DNA (cytosine-5-)-methyltransferase | |||
| 1118 | 631 aa conserved hypothetical protein | |||
| ??? | R | HpyD1cORF5360P (100% identity) | HpyB8ORF1122P | |
| 1122 | M | M.HpyR3cORF5365P (100% identity) | M.HpyB8ORF1122P | |
| 1123 | S | S.HpyR3cORF5365P (100% identity) | S.HpyB8ORF1122P | |
| 1124 | 31 aa hypothetical protein predicted by | |||
| 1703 | 235 aa conserved hypothetical protein | |||
| 1704 | R | HpyR3cORF8160P (99% identity) | HpyB8ORF1705P | |
| 1705 | M | M.HpyR3cORF8160P (100% identity) | M.HpyB8ORF1705P | |
| 1706 | S | S.HpyB128ORF3P (61% identity) | S.HpyB8ORF1705P | |
| 1707 | 43 aa hypothetical protein predicted by | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9 | type III restriction enzyme | |||
| ??? | RM | HpyR3cORF55P (100% identity) | HpyB8ORF10P | |
| 12 | 145 aa conserved hypothetical protein | |||
| 28 | 383 aa conserved hypothetical protein | |||
| 29 | R | HpyR3cORF145P (100% identity) | CCATC | HpyB8ORF30P |
| 30 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M2.HpyB8ORF30P |
| 31 | M | M2.HpyR3cORF145P (100% identity) | GATGG | M1.HpyB8ORF30P |
| 32 | 355 aa conserved hypothetical protein | |||
| 57 | competence protein ComFC | |||
| 58 | RM | HpyR3cORF285P (100% identity) | HpyB8ORF58P | |
| ??? | S | S.HpyR3cORF285P (100% identity) | S.HpyB8ORF58P | |
| 61 | DNA polymerase I | |||
| 126 | UDP-N-acetylmuramate dehydrogenase | |||
| ??? | R | Hpy7133ORF570P (100% identity) | GAATTC | HpyB8ORF127P |
| 129 | carboxyl-terminal processing protease | |||
| 278 | serine O-acetyltransferase | |||
| ??? | R | HpyB128KORF1320P (100% identity) | CATG | HpyB8ORF281P |
| 281 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyB8ORF281P |
| 282 | 39 aa hypothetical protein predicted by | |||
| 314 | purine-nucleoside phosphorylase | |||
| 315 | R | HpyU408XP (100% identity) | TCNGA | HpyB8ORF316P |
| 316 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyB8ORF316P |
| 317 | 38 aa hypothetical protein predicted by | |||
| 379 | 67 aa conserved hypothetical protein | |||
| 380 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyB8ORF380P |
| 381 | 144 aa conserved hypothetical protein | |||
| 415 | 199 aa conserved hypothetical protein | |||
| 416 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyB8ORF417P |
| 417 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyB8ORF417P |
| 418 | biotin carboxylase | |||
| 641 | Rep helicase, single-stranded DNA-dependent | |||
| 642 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.HpyB8ORF642P |
| 643 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB8ORF642P |
| 644 | flagellar hook protein FlgE | |||
| 686 | DNA gyrase, B subunit | |||
| 687 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyB8ORF687P |
| ??? | R | HpyR3cORF3315P (100% identity) | GTAC | HpyB8ORF687P |
| 690 | Uncharacterized metalloprotease yebA precursor | |||
| 869 | anaerobic glycerol-3-phosphate dehydrogenase, C | |||
| ??? | RM | HpyB1281ORF4175P (100% identity) | HpyB8ORF870P | |
| 872 | NAD-dependent deacetylase | |||
| 1058 | type I restriction enzyme M protein | |||
| 1059 | M | M.HpyR3cORF5085P (100% identity) | GGCC | M.HpyB8ORF1059P |
| 1060 | R | HpyR3cORF5085P (100% identity) | GGCC | HpyB8ORF1059P |
| 1061 | 228 aa conserved hypothetical protein | |||
| 1096 | catalase | |||
| 1097 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyB8ORF1098P |
| 1098 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyB8ORF1098P |
| 1099 | 170 aa conserved hypothetical protein | |||
| 1098 | DNA (cytosine-5-)-methyltransferase | |||
| 1099 | R | HpyB128ORF4P (100% identity) | ACNGT | HpyB8ORF1100P |
| ??? | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyB8ORF1100P |
| 1102 | GTP-binding protein | |||
| 1298 | ATP-dependent Clp protease ATP-binding subunit | |||
| 1299 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyB8ORF1299P |
| ??? | R | HpyB128ORF40P (100% identity) | CCGG | HpyB8ORF1299P |
| 1302 | 198 aa conserved hypothetical protein | |||
| 1302 | 198 aa conserved hypothetical protein | |||
| 1303 | M | M.HpyR3cORF6235P (98% identity) | TCGA | M.HpyB8ORF1303P |
| 1304 | exodeoxyribonuclease VII large subunit | |||
| 1472 | alpha(1,2)fucosyltransferase | |||
| 1473 | M | M.HpyR3cORF7075P (100% identity) | GATC | M.HpyB8ORF1473P |
| 1475 | [acyl-carrier-protein] S-malonyltransferase | |||
| 1515 | 35 aa hypothetical protein predicted by | |||
| 1516 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyB8ORF1517P |
| ??? | M | M.HpyB128ORFBP (100% identity) | GTSAC | M.HpyB8ORF1517P |
| 1519 | 419 aa conserved hypothetical protein | |||
| ??? | hypothetical protein | |||
| 1519 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyB8ORF1520P |
| 1520 | DNA (cytosine-5-)-methyltransferase | |||
| 1521 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyB8ORF1520P |
| 1522 | agmatine deiminase | |||
| 1522 | agmatine deiminase | |||
| ??? | RM | HpyR3cORF7315P (100% identity) | HpyB8ORF1523P | |
| 1526 | nicotinate-nucleotide pyrophosphorylase | |||
| 1573 | 368 aa conserved hypothetical protein | |||
| 1574 | M | M.HpyB1283ORF7525P (100% identity) | GAATTC | M.HpyB8ORF1574P |
| 1575 | adenine DNA methyltransferase protein | |||
| 1574 | adenine-specific methyltransferase EcoRI | |||
| 1575 | M | adenine DNA methyltransferase protein | M.HpyB8ORF1575P | |
| 1576 | agmatine deiminase | |||
| 1683 | elongation factor EF-Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyB8ORF1686P |
| 1686 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyB8ORF1686P |
| 1687 | 67 aa conserved hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyR3cORF45P (100% identity) | M.HpyB8ORF7P | |
| 9 | R | HpyR3cORF45P (100% identity) | HpyB8ORF7P | |
| 10 | type IIS restriction/modification | |||
| ??? | hypothetical protein | |||
| 9 | R | HpyR3cORF45P (100% identity) | HpyB8ORF8P | |
| 10 | type IIS restriction/modification | |||
| 1536 | two-component system, OmpR family, response | |||
| ??? | M | M.HpyR3cORF7375P (100% identity) | M.HpyB8ORF1537P | |
| 1539 | R | HpyR3cORF7375P (100% identity) | HpyB8ORF1537P | |
| 1540 | rod shape-determining protein MreC | |||
| 1551 | 287 aa conserved hypothetical protein | |||
| 1552 | M | M.HpyR3cORF7440P (100% identity) | M.HpyB8ORF1552P | |
| ??? | R | HpyB1282ORF7450P (100% identity) | HpyB8ORF1552P | |
| 1555 | biotin synthetase | |||