Sterolibacterium denitrificans Chol |
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Putative Sterolibacterium denitrificans Chol RM systems
Ref:
REBASE ref # 25530
| Sequence length: | GenBank #: | |
| chromosome SDENCHOL: | 3,017,194 bp | LT837803 |
| plasmid SDENCHOLpa: | 39,597 bp | LT837804 |
| plasmid SDENCHOLpb: | 26,479 bp | LT837805 |
| plasmid SDENCHOLpc: | 19,947 bp | LT837806 |
REBASE acronym: SdeCho1
Org_num: 26935
All begin SDENCHOL_, SDENCHOL_PA, SDENCHOL_PB, SDENCHOL_PC
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome SDENCHOL | ||||
| 20311 | protein of unknown function | |||
| 20312 | R | MspEFPC2ORF19800P (71% identity) | SdeCho1ORF20313P | |
| 20313 | M | M.SspT08ORFEP (76% identity) | M.SdeCho1ORF20313P | |
| 20314 | S | S.MacORF2103AP (35% identity) | S.SdeCho1ORF20313P | |
| 20315 | protein of unknown function | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome SDENCHOL | ||||
| 10092 | Phosphotransferase related to Ser/Thr protein | |||
| 10093 | M | M.RbaThORF14895P (62% identity) | M.SdeCho1ORF10093P | |
| 10094 | Nucleotidyl transferase | |||
| 10272 | RNA polymerase, sigma 32 (sigma H) factor | |||
| 10273 | M | M.AspM932ORF8555P (61% identity) | M.SdeCho1ORF10273P | |
| 10274 | R | restriction endonuclease | SdeCho1ORF10273P | |
| 10275 | protein of unknown function | |||
| 20587 | conserved protein of unknown function | |||
| 20588 | M | M.PspJBR18ORF9790P (87% identity) | M.SdeCho1ORF20588P | |
| ??? | V | V.PpnORF12180P (81% identity) | V.SdeCho1ORF20588P | |
| 20589 | DNA binding protein, possibly | |||
| 21274 | transposase | |||
| ??? | V | V.AviAORF7371P (60% identity) | V.SdeCho1ORF21272P | |
| 21276 | C-5 cytosine-specific DNA methylase | |||
| ??? | very short patch repair endonuclease | |||
| 21276 | M | M.AvisD3aORF21930P (94% identity) | M.SdeCho1ORF21276P | |
| 21278 | Transcriptional regulator, LysR family (CMGI-2) | |||
| plasmid SDENCHOLpa | ||||
| 20001 | conserved protein of unknown function | |||
| 20002 | M | M.Tte58ORF18520P (85% identity) | M.SdeCho1ORF20002P | |
| 20003 | conserved protein of unknown function | |||
| plasmid SDENCHOLpb | ||||
| 13 | conserved protein of unknown function | |||
| 14 | R | Vfi15551ORF3539P (99% identity) | CTCGAG | SdeCho1ORF15P |
| 15 | M | M.UbapRSB105ORFAP (92% identity) | M.SdeCho1ORF15P | |
| 16 | site-specific DNA recombinase; e14 prophage | |||
| plasmid SDENCHOLpc | ||||
| 22 | Partitioning protein A | |||
| 23 | R | Pac25I (99% identity) | CCCGGG | SdeCho1ORF24P |
| ??? | M | M.Gin17901ORFEP (99% identity) | M.SdeCho1ORF24P | |
| 2 | conserved protein of unknown function | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome SDENCHOL | ||||
| 10616 | Long-chain-fatty-acid--CoA ligase | |||
| 10617 | M | M.KorFY07ORF9260P (46% identity) | M.SdeCho1ORF10617P | |
| 10619 | conserved protein of unknown function | |||
| 10620 | protein of unknown function | |||
| 10621 | R | PaeLo4ORF8025P (91% identity) | SdeCho1ORF10617P | |
| 10622 | enoyl-CoA hydratase echA12 | |||