Shewanella species Pdp11 |
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Putative Shewanella species Pdp11 RM systems
Ref: Tapia-Paniagua,S.T. et al. unpublished
REBASE ref # 25468
Complete sequence: 4,973,697 bp
GenBank #: CP015194
REBASE acronym: SspPdp11
Org_num: 26804
All begin AYJ58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8560 | 292 aa hypothetical protein | |||
| 8565 | M | M.Psp9913ORF2853P (93% identity) | M.SspPdp11ORF8565P | |
| 8570 | 355 aa hypothetical protein | |||
| 8575 | S | S.Psp9913ORF2853P (91% identity) | S.SspPdp11ORF8565P | |
| 8580 | 412 aa hypothetical protein | |||
| 8585 | R | MspGE09ORF466P (79% identity) | SspPdp11ORF8565P | |
| 8590 | 244 aa hypothetical protein | |||
| 13065 | 66 aa hypothetical protein | |||
| 13070 | M | M.Sli19866ORF2575P (91% identity) | M.SspPdp11ORF13070P | |
| 13075 | DNA-binding protein | |||
| 13080 | S | S.VshQT6D1ORF22275P (50% identity) | S.SspPdp11ORF13070P | |
| 13085 | hydroxyacid dehydrogenase | |||
| 13090 | R | SbaTMP1ORF21150P (92% identity) | SspPdp11ORF13070P | |
| 13095 | 70 aa hypothetical protein | |||
| 17680 | metal-dependent hydrolase | |||
| 17685 | R | Ssp53764ORF9400P (96% identity) | SspPdp11ORF17695P | |
| 17690 | S | S1.Tsu358ORFBP (93% identity) | S.SspPdp11ORF17695P | |
| 17695 | M | M.Ssp53764ORF9400P (94% identity) | M.SspPdp11ORF17695P | |
| 17700 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4095 | AAA family ATPase | |||
| 4100 | M | M.SpuYZ08DamP (99% identity) | GATC | M.SspPdp11DamP |
| 4105 | 121 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18885 | restriction endonuclease | |||
| 18890 | R | Vch876ORF3611P (99% identity) | SspPdp11ORF18895P | |
| 18895 | M | M.EcoZ137ORF23285P (56% identity) | M.SspPdp11ORF18895P | |
| 18900 | 228 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 860 | LysR family transcriptional regulator | |||
| 865 | R | SxiVS1ORF39880P (99% identity) | SspPdp11ORF865P | |
| 870 | cell filamentation protein Fic | |||
| 12245 | transposase | |||
| 12250 | R | Sba185McrBP (21% identity) | SspPdp11McrBP | |
| 12255 | R | Sba185McrCP (96% identity) | SspPdp11McrCP | |
| 12260 | transcriptional regulator | |||
| 17695 | restriction endonuclease subunit S | |||
| 17700 | R | Spu12093MrrP (96% identity) | SspPdp11Mrr2P | |
| 17705 | transcriptional regulator | |||
| 18880 | phosphohydrolase | |||
| 18885 | R | Pte1MrrP (98% identity) | SspPdp11MrrP | |
| 18890 | restriction endonuclease subunit R | |||