Clostridioides difficile W0023a |
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Putative Clostridioides difficile W0023a RM systems
Ref: Chen,D.S. et al. unpublished
REBASE ref # 26157
Complete sequence: 4,110,080 bp
GenBank #: CP025045
REBASE acronym: Cdi23a
Org_num: 26781
All begin CWR56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15325 | DUF262 domain-containing protein | |||
| ??? | R | CdiST42ORF15650P (100% identity) | CANNNNNNNTAAAG | Cdi23aORF15355P |
| 15335 | 142 aa hypothetical protein | |||
| 15340 | nucleotidyltransferase domain-containing | |||
| 15345 | 102 aa hypothetical protein | |||
| 15350 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi23aORF15355P |
| 15355 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi23aORF15355P |
| 15360 | ketose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1965 | 0 aa hypothetical protein | |||
| 1970 | C | C.PdiZ31ORF415P (100% identity) | C.Cdi23aORF1970P | |
| ??? | N-6 DNA methylase | |||
| 1970 | XRE family transcriptional regulator | |||
| ??? | RM | Cdo002IV (100% identity) | GCMGAAG | Cdi23aORF1975P |
| 1980 | 224 aa hypothetical protein | |||
| 13985 | phospholipase | |||
| 13990 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi23aORF13990P |
| 13995 | Rrf2 family transcriptional regulator | |||
| 15735 | LytTR family transcriptional regulator | |||
| 15740 | M | M.CdiST42DndCP (100% identity) | M.Cdi23aDndCP | |
| 15745 | DNA sulfur modification protein DndD | |||
| 15740 | DNA phosphorothioation system sulfurtransferase | |||
| 15745 | M | M.CdiST42DndDP (100% identity) | M.Cdi23aDndDP | |
| 15750 | DUF1832 domain-containing protein | |||
| 15745 | DNA sulfur modification protein DndD | |||
| 15750 | M | M.CdiCd24DndEP (100% identity) | M.Cdi23aDndEP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 15750 | DUF1832 domain-containing protein | |||
| ??? | R | CdiST42DptHP (100% identity) | Cdi23aDptHP | |
| 15765 | DNA phosphorothioation-dependent restriction | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 15765 | R | CdiST42DptGP (100% identity) | Cdi23aDptGP | |
| 15770 | DNA phosphorothioation-dependent restriction | |||
| 15765 | DNA phosphorothioation-dependent restriction | |||
| 15770 | R | CdiST42DptFP (100% identity) | Cdi23aDptFP | |
| 15775 | 90 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10040 | AAA family ATPase | |||
| 10045 | R | Cdo002McrCP (100% identity) | Cdi23aMcrCP | |
| 10050 | R | Pdi6602McrBP (100% identity) | Cdi23aMcrBP | |
| 10055 | cell division protein | |||