Clostridioides difficile W0003a |
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Putative Clostridioides difficile W0003a RM systems
Ref: Chen,D.S. et al. unpublished
REBASE ref # 26157
Complete sequence: 4,075,361 bp
GenBank #: CP025047
REBASE acronym: Cdi3a
Org_num: 26777
All begin CWR54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 14960 | DUF262 domain-containing protein | |||
| ??? | R | Cdo002IIIP (100% identity) | GAANNNNNNCTG | Cdi3aORF14985P |
| 14970 | 142 aa hypothetical protein | |||
| 14975 | nucleotidyltransferase domain-containing | |||
| 14980 | S | S.Cdo002III (100% identity) | GAANNNNNNCTG | S.Cdi3aORF14985P |
| 14985 | M | M.PdiZ31ORF1268P (100% identity) | GAANNNNNNCTG | M.Cdi3aORF14985P |
| 14990 | ketose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1955 | 0 aa hypothetical protein | |||
| 1960 | C | C.PdiZ31ORF415P (100% identity) | C.Cdi3aORF1960P | |
| ??? | N-6 DNA methylase | |||
| 1960 | XRE family transcriptional regulator | |||
| ??? | RM | Cdo002IV (100% identity) | GCMGAAG | Cdi3aORF1965P |
| 1970 | 224 aa hypothetical protein | |||
| 13695 | phospholipase | |||
| 13700 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi3aORF13700P |
| 13705 | Rrf2 family transcriptional regulator | |||
| 15565 | caspase | |||
| ??? | M | M.Cdo002V (100% identity) | GGNCC | M.Cdi3aORF15570P |
| 15575 | R | CdiS0253ORF15585P (100% identity) | GGNCC | Cdi3aORF15570P |
| 15580 | 92 aa hypothetical protein | |||
| 15625 | 1523 aa hypothetical protein | |||
| 15630 | R | M.Cdo002II (49% identity) | Cdi3aORF15630P | |
| 15635 | M | M.Cdo002II (49% identity) | M.Cdi3aORF15630P | |
| 15640 | pseudogene | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10185 | AAA family ATPase | |||
| 10190 | R | Cdo002McrCP (100% identity) | Cdi3aMcrCP | |
| 10195 | R | Pdi6602McrBP (100% identity) | Cdi3aMcrBP | |
| 10200 | cell division protein | |||