Helicobacter cinaedi MRY08-1234 |
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Putative Helicobacter cinaedi MRY08-1234 RM systems
Ref: Rimbara,E. et al. unpublished
REBASE ref # 25388
Complete sequence: 2,199,263 bp
GenBank #: AP017374
REBASE acronym: Hci1234
Org_num: 26650
All begin HC081234_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 370 | type I restriction-modification system, | |||
| 380 | RM | Hci611ORFHP (77% identity) | Hci1234ORF380P | |
| 390 | type I restriction-modification system, | |||
| 1150 | RNA polymerase sigma-54 factor RpoN | |||
| 1160 | R | Hci629ORFAP (100% identity) | Hci1234ORF1170P | |
| 1170 | M | M.Hci629ORFAP (100% identity) | M.Hci1234ORF1170P | |
| 1180 | SSU ribosomal protein S2p | |||
| 4010 | 142 aa hypothetical protein | |||
| 4020 | M | M.HciP01DORFBP (100% identity) | M.Hci1234ORF4020P | |
| 4030 | 249 aa hypothetical protein | |||
| 4860 | iron-sulfur cluster assembly scaffold protein | |||
| 4870 | R | Hci629ORFVP (100% identity) | Hci1234ORF4880P | |
| 4880 | M | M.HciP01DORFZP (100% identity) | M.Hci1234ORF4880P | |
| 4890 | cysteine desulfurase | |||
| 9670 | lipoprotein signal peptidase | |||
| 9680 | RM | HciORF1075P (100% identity) | Hci1234ORF9680AP | |
| 9690 | RM | Hci629ORFUP (41% identity) | Hci1234ORF9680BP | |
| 9700 | RM | Hci629ORFUP (54% identity) | Hci1234ORF9680CP | |
| 9710 | histidine permease YuiF | |||
| 9940 | 47 aa hypothetical protein | |||
| 9950 | RM | Hci629ORFCP (89% identity) | Hci1234ORF9950P | |
| 9960 | arginine-tRNA-protein transferase | |||
| 10970 | 193 aa hypothetical protein | |||
| 10980 | M | M.Hci7095ORF5440P (100% identity) | M.Hci1234ORF10980P | |
| 10990 | protein of unknown function DUF262 family | |||
| 11170 | GMP synthase [glutamine-hydrolyzing], | |||
| 11180 | R | HciP01DORFTP (100% identity) | Hci1234ORF11190P | |
| ??? | M | M.HciP01DORFTP (100% identity) | M.Hci1234ORF11190P | |
| 11200 | 377 aa hypothetical protein | |||
| ??? | DNA methyltransferase | |||
| 11200 | M | M.Hci629ORFSP (95% identity) | M.Hci1234ORF11200P | |
| 11210 | R | Hci629ORFSP (100% identity) | Hci1234ORF11200P | |
| 11220 | tRNA nucleotidyltransferase | |||
| 12440 | cystathionine gamma-lyase | |||
| 12450 | M | DNA modification methyltransferase | M1.Hci1234ORF12450P | |
| 12460 | M | DNA modification methyltransferase | M2.Hci1234ORF12450P | |
| ??? | R | Hci629ORFPP (100% identity) | Hci1234ORF12450P | |
| 12490 | 33 aa hypothetical protein | |||
| 12510 | DNA-cytosine methyltransferase | |||
| 12520 | M | M.Hci629ORFQP (70% identity) | M.Hci1234ORF12520P | |
| 12530 | R | HciP01DORFXP (100% identity) | Hci1234ORF12520P | |
| 12540 | 357 aa hypothetical protein | |||
| 14830 | 45 aa hypothetical protein | |||
| 14840 | R | Hci629ORFDP (100% identity) | Hci1234ORF14850P | |
| 14850 | M | M.Hci629ORFDP (100% identity) | M.Hci1234ORF14850P | |
| 14860 | predicted secreted protein | |||
| 16550 | 145 aa hypothetical protein | |||
| 16560 | R | Hci629ORFNP (99% identity) | Hci1234ORF16570P | |
| 16570 | M | M1.Hci629ORFNP (100% identity) | M1.Hci1234ORF16570P | |
| 16580 | M | M2.Hci629ORFNP (100% identity) | M2.Hci1234ORF16570P | |
| 16590 | 39 aa hypothetical protein | |||
| 17440 | 262 aa hypothetical protein | |||
| ??? | RM | Hci629ORFMP (100% identity) | Hci1234ORF17450P | |
| 17470 | YpfJ protein, zinc metalloprotease superfamily | |||
| 19040 | aspartyl-tRNA(Asn) amidotransferase subunit B | |||
| 19050 | RM | Hci629ORFLP (100% identity) | Hci1234ORF19050P | |
| 19060 | integral membrane protein | |||
| 19390 | stomatin/prohibitin-family membrane | |||
| ??? | R | Hci629ORFJP (50% identity) | Hci1234ORF19420P | |
| ??? | M | M1.Hci629ORFJP (100% identity) | M.Hci1234ORF19420P | |
| 19470 | type IIS restriction enzyme | |||
| 19800 | 4-hydroxybenzoyl-CoA thioesterase family active | |||
| 19810 | M | M.Hci629ORFEP (100% identity) | M.Hci1234ORF19810P | |
| 19820 | R | Hci629ORFEP (100% identity) | Hci1234ORF19810P | |
| 19830 | mobile element protein | |||
| 20270 | 53 aa hypothetical protein | |||
| 20280 | M | M.HciORF2076P (100% identity) | M.Hci1234ORF20280P | |
| 20290 | R | HciORF2076P (100% identity) | Hci1234ORF20280P | |
| 20300 | 38 aa hypothetical protein | |||
| 22650 | septum site-determining protein MinD | |||
| 22660 | R | Hci629ORFGP (100% identity) | Hci1234ORF22670P | |
| 22670 | M | M.Hci629ORFGP (100% identity) | M.Hci1234ORF22670P | |
| 22680 | argininosuccinate synthase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 730 | carboxynorspermidine dehydrogenase, putative | |||
| 740 | M | M.Hci629ORFWP (100% identity) | M.Hci1234ORF740P | |
| 750 | ATPase family protein | |||
| 760 | DNA-binding protein in cluster with | |||
| 770 | R | Hci629ORFWP (100% identity) | Hci1234ORF740P | |
| 780 | methyl-accepting chemotaxis signal transduction | |||
| 14340 | 45 aa hypothetical protein | |||
| 14350 | R | Hci611ORFCP (100% identity) | Hci1234ORF14360P | |
| 14360 | M | M.Hci629ORFOP (100% identity) | M.Hci1234ORF14360P | |
| 14370 | restriction endonuclease | |||
| 21430 | methylglyoxal reductase, acetol producing | |||
| 21440 | M | M.Hci629ORFIP (94% identity) | M.Hci1234ORF21440P | |
| 21450 | R | Hci629ORFIP (99% identity) | Hci1234ORF21440P | |
| 21460 | transcriptional regulator | |||