Helicobacter pylori v225d |
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Putative Helicobacter pylori v225d RM systems
Ref: Mane,S.P. et al. J. Bacteriol. 192 (12), 3078-3092 (2010)
REBASE ref # 11796
Complete sequence: 1,588,278 bp
GenBank #: CP001582
REBASE acronym: Hpy225
Org_num: 6051
All begin HPV225_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 458 | Polyphosphate kinase | |||
| 460 | S | S.HpyPU004ORF2170P (97% identity) | S.Hpy225ORF461P | |
| 461 | M | M.HpyME12XIX (96% identity) | M.Hpy225ORF461P | |
| 463 | 44 aa Hypothetical protein | |||
| ??? | R | Hpy120ORF2240P (19% identity) | Hpy225ORF461P | |
| 464 | 631 aa Hypothetical protein | |||
| 802 | 43 aa Hypothetical protein | |||
| 803 | S | S.Hpy49ORF4080P (93% identity) | S.Hpy225ORF803P | |
| 805 | heavy metal translocating P-type ATPase | |||
| 865 | hydroxyethylthiazole kinase | |||
| 866 | R | HpyP89ORFPP (95% identity) | Hpy225ORF869P | |
| 867 | S | S.HpyPE121ORF3255P (68% identity) | S.Hpy225ORF869P | |
| 869 | M | M.HpyPU010VII (95% identity) | M.Hpy225ORF869P | |
| 870 | 223 aa Hypothetical protein | |||
| 1453 | 82 aa Hypothetical protein | |||
| ??? | S | S.HpyK28V (85% identity) | S.Hpy225ORF1456P | |
| 1456 | M | M.HpyME09IX (15% identity) | M.Hpy225ORF1456P | |
| 1457 | R | HpyLIM7ORFYP (47% identity) | Hpy225ORF1456P | |
| 1458 | 235 aa Hypothetical protein | |||
| 1483 | formyltetrahydrofolate deformylase | |||
| 1484 | S | S.HpyJ019ORF7295P (96% identity) | S.Hpy225ORF1484P | |
| 1485 | 30 aa Hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | agmatine deiminase | |||
| 56 | M | M1.HpyMKF3ORF60P (98% identity) | CCTC | M1.Hpy225ORF56P |
| 57 | M | M1.Hpyfe78ORF6990P (61% identity) | CCTC | M2.Hpy225ORF56P |
| 58 | sodium/proline symporter | |||
| 98 | malonyl CoA-acyl carrier protein transacylase | |||
| 100 | R | HpyPU006XP (94% identity) | GATC | Hpy225ORF101P |
| 101 | M | M.HpyMTT03ORFHP (98% identity) | GATC | M.Hpy225ORF101P |
| 102 | pseudogene | |||
| 278 | exodeoxyribonuclease VII, large subunit | |||
| 279 | R | HpyU412IIP (81% identity) | CCGG | Hpy225ORF281P |
| 281 | M | M.Hpy05124ORFAP (99% identity) | CCGG | M.Hpy225ORF281P |
| 282 | Chaperone protein clpB | |||
| 328 | 293 aa Hypothetical protein | |||
| 329 | R | HpyOK30ORFQP (94% identity) | CTNAG | Hpy225ORF330P |
| 330 | M | M.HpyPU006VI (100% identity) | CTNAG | M.Hpy225ORF330P |
| 331 | 125 aa Hypothetical protein | |||
| 476 | outer membrane protein (omp22) | |||
| 477 | M | M.HpyK043VI (98% identity) | ATTAAT | M.Hpy225ORF477P |
| 478 | type II adenine specific methyltransferase | |||
| 479 | GTP-binding protein TypA | |||
| 480 | M | M.HpySH007II (100% identity) | ACNGT | M.Hpy225ORF480P |
| 481 | R | HpyCRI3IIP (99% identity) | ACNGT | Hpy225ORF480P |
| 482 | DNA-cytosine methyltransferase | |||
| 481 | type II restriction endonuclease | |||
| 482 | M | M.Hpy120ORF2335P (75% identity) | ACGT | M.Hpy225ORF482P |
| 483 | R | 207 aa Hypothetical protein | ACGT | Hpy225ORF482P |
| 484 | 61 aa Hypothetical protein | |||
| 674 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
| 675 | RM | Hpy20ORF3615P (93% identity) | Hpy225ORF675P | |
| 677 | 448 aa Hypothetical protein | |||
| 693 | 276 aa Hypothetical protein | |||
| 694 | M | M.Hpy1768ORFNP (99% identity) | CCNNGG | M.Hpy225ORF694P |
| 695 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | Hpy225ORF694P |
| 696 | 96 aa Hypothetical protein | |||
| 928 | flagellar hook protein FlgE | |||
| 929 | R | Hpyfe73ORF2730P (91% identity) | GTNNAC | Hpy225ORF930P |
| 930 | M | M.HpySORF4790P (93% identity) | GTNNAC | M.Hpy225ORF930P |
| 931 | ATP-dependent DNA helicase pcrA | |||
| 1101 | acetyl-CoA carboxylase, biotin carboxylase | |||
| 1102 | M | M.HpyU203XII (100% identity) | TCNNGA | M.Hpy225ORF1102P |
| 1103 | 182 aa Hypothetical protein | |||
| 1102 | type II DNA modification enzyme | |||
| 1103 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpy225ORF1103P |
| 1104 | Laminin subunit alpha-2 precursor | |||
| 1141 | 33 aa Hypothetical protein | |||
| 1142 | M | DNA-cytosine methyltransferase | GCGC | M.Hpy225ORF1142P |
| 1143 | flgM protein | |||
| 1241 | 222 aa Hypothetical protein | |||
| 1242 | M | M.HpyPU002I (99% identity) | CATG | M.Hpy225ORF1242P |
| 1243 | R | Hpy1766ORFOP (93% identity) | CATG | Hpy225ORF1242P |
| 1244 | serine O-acetyltransferase | |||
| 1388 | carboxyl-terminal protease | |||
| 1389 | R | Hpy464ORF6555P (97% identity) | GANTC | Hpy225ORF1390P |
| 1390 | M | M.Hpyfe64ORF7055P (99% identity) | GANTC | M.Hpy225ORF1390P |
| 1391 | nicotinate-nucleotide pyrophosphorylase | |||
| 1401 | Response regulator arlR | |||
| 1402 | R | Hpy1681ORFFP (99% identity) | GAAGA | R1.Hpy225ORF1404P |
| 1403 | R | Hpy84ORF6215P (29% identity) | GAAGA | R2.Hpy225ORF1404P |
| 1404 | M | Modification methylase | GAAGA | M1.Hpy225ORF1404P |
| 1405 | M | M.HpyPE11III (99% identity) | GAAGA | M2.Hpy225ORF1404P |
| 1406 | 398 aa Hypothetical protein | |||
| 1437 | 369 aa Hypothetical protein | |||
| 1438 | M | M.HpySH010VII (99% identity) | GAATTC | M.Hpy225ORF1438P |
| 1439 | R | HpyTW03VIIP (98% identity) | GAATTC | Hpy225ORF1438P |
| 1440 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 1475 | 67 aa Hypothetical protein | |||
| 1476 | M | type II methylase protein | TGCA | M.Hpy225ORF1476P |
| 1477 | 89 aa Hypothetical protein | |||
| 1498 | type III restriction enzyme | |||
| 1499 | RM | HpyAR9XI (91% identity) | Hpy225ORF1499P | |
| 1500 | transcription termination factor NusA | |||
| 1513 | 376 aa Hypothetical protein | |||
| ??? | R | HpyCHN10IIIP (68% identity) | CCATC | Hpy225ORF1515P |
| 1515 | M | M2.HpyPU008III (99% identity) | CCATC | M2.Hpy225ORF1515P |
| 1516 | M | M1.HpyPE19IV (99% identity) | GATGG | M1.Hpy225ORF1515P |
| 1517 | 355 aa Hypothetical protein | |||
| 1542 | 191 aa hypothetical protein | |||
| 1543 | RM | HpyNCI25ORFIP (99% identity) | Hpy225ORF1543P | |
| 1544 | S | S.HpyJA104VI (65% identity) | S.Hpy225ORF1543P | |
| 1545 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 598 | Pyruvate synthase subunit porC | |||
| 599 | R | HpyKG10XIIP (93% identity) | Hpy225ORF600P | |
| 600 | M | M.HpyPO101XII (90% identity) | M.Hpy225ORF600P | |
| 601 | 54 aa Hypothetical protein | |||
| 832 | 149 aa Hypothetical protein | |||
| 833 | R | Hpy464ORF6635P (97% identity) | Hpy225ORF834P | |
| ??? | M | M.HpyK010XIV (96% identity) | M.Hpy225ORF834P | |
| 836 | osmoprotection protein (proWX) | |||
| 1408 | 479 aa Hypothetical protein | |||
| 1409 | R | type III restriction enzyme R protein | Hpy225ORF1409P | |
| 1410 | rod shape-determining protein | |||
| 1419 | endonuclease | |||
| 1420 | M | M.HpySH011ORF6665P (97% identity) | M.Hpy225ORF1420P | |
| ??? | R | Hpy1766ORFDP (94% identity) | Hpy225ORF1420P | |
| 1423 | biotin synthase | |||
| 1496 | ATP-dependent DNA helicase RecG | |||
| 1497 | M | M.HpyPU001ORF7350P (97% identity) | M.Hpy225ORF1497P | |
| 1498 | R | HpyPU002ORF7075P (96% identity) | Hpy225ORF1497P | |
| 1499 | type II S restriction-modification protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1014 | 1061 aa Hypothetical protein | |||
| 1015 | R | 347 aa Hypothetical protein | Hpy225McrBP | |
| 1016 | Trichohyalin | |||
| 1019 | 126 aa conserved hypothetical protein | |||
| 1020 | R | 53 aa Hypothetical protein | Hpy225McrB4P | |
| 1021 | 100 aa Hypothetical protein | |||
| 1020 | 53 aa Hypothetical protein | |||
| 1021 | R | 100 aa Hypothetical protein | Hpy225McrB5P | |
| 1022 | 706 aa Hypothetical protein | |||