Prevotella intermedia KCOM 1933 |
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Putative Prevotella intermedia KCOM 1933 RM systems
Ref: Kook,J.-K. et al. unpublished
REBASE ref # 24621
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,136,938 bp | CP024729 |
| chromosome 2: | 600,174 bp | CP024730 |
REBASE acronym: Pin1933
Org_num: 26579
All begin CTM44_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 6275 | 0 aa hypothetical protein | |||
| 6280 | C | C.Pin1944ORF3640P (100% identity) | C.Pin1933IIIP | |
| 6285 | cell filamentation protein Fic | |||
| 6290 | R | Pin1944ORF3640P (100% identity) | GARANNNNNNNTAG | Pin1933IIIP |
| 6295 | S | S.Pin1944ORF3640P (100% identity) | GARANNNNNNNTAG | S.Pin1933III |
| 6300 | anticodon nuclease | |||
| 6305 | M | M.Pin1944ORF3640P (100% identity) | GARANNNNNNNTAG | M.Pin1933III |
| 6310 | DUF262 domain-containing protein | |||
| 6700 | peptidase M6 | |||
| 6705 | C | C.Psp860ORF4885P (100% identity) | C.Pin1933IIP | |
| 6710 | R | Pin1944ORF3230P (100% identity) | GAAYNNNNNNNRTG | Pin1933IIP |
| 6715 | M | M.Pin1944ORF3230P (100% identity) | GAAYNNNNNNNRTG | M.Pin1933II |
| 6720 | DNA-binding protein | |||
| 6725 | type II toxin-antitoxin system death-on-curing | |||
| 6730 | 165 aa hypothetical protein | |||
| 6735 | S | S1.PgiLyG2ORF2305P (100% identity) | GAAYNNNNNNNRTG | S1.Pin1933II |
| 6740 | S | S2.Pin1944ORF3230P (87% identity) | S2.Pin1933IIP | |
| 6745 | integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 960 | 293 aa hypothetical protein | |||
| 965 | R | Pin1944IP (100% identity) | GATC | Pin1933IP |
| 970 | M | M.Pin1944I (100% identity) | GATC | M.Pin1933I |
| 975 | 4-hydroxy-3-methylbut-2-enyl diphosphate | |||
| 1400 | 63 aa hypothetical protein | |||
| 1405 | M | M.Pin1944ORF8530P (100% identity) | M.Pin1933ORF1405P | |
| 1410 | 174 aa hypothetical protein | |||
| 1440 | 123 aa hypothetical protein | |||
| 1445 | M | M.Pin1944ORF8490P (100% identity) | M.Pin1933ORF1445P | |
| 1450 | 108 aa hypothetical protein | |||
| chromosome 2 | ||||
| 10980 | SNF2/RAD54 family helicase | |||
| 10985 | RM | Pin1944ORF11850P (87% identity) | Pin1933ORF10985P | |
| 10990 | type II restriction endonuclease subunit M | |||