Prevotella intermedia KCOM 2838 |
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Putative Prevotella intermedia KCOM 2838 RM systems
Ref: Kook,J.-K. et al. unpublished
REBASE ref # 24621
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,092,617 bp | CP024725 |
| chromosome 2: | 683,216 bp | CP024726 |
REBASE acronym: Pin2838
Org_num: 26580
All begin CTM63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1055 | cell filamentation protein Fic | |||
| 1060 | R | Pin1944ORF3640P (99% identity) | GAANNNNNNNTTRG | Pin2838IP |
| 1065 | S | S.Asp910ORF5125P (37% identity) | GAANNNNNNNTTRG | S.Pin2838I |
| 1070 | anticodon nuclease | |||
| 1075 | M | M.Pin1944ORF3640P (96% identity) | GAANNNNNNNTTRG | M.Pin2838I |
| 1080 | 612 aa hypothetical protein | |||
| chromosome 2 | ||||
| 11995 | 66 aa hypothetical protein | |||
| 12000 | R | Pin14ORF436P (99% identity) | Pin2838ORF12010P | |
| 12005 | S | S.PcoInORF1275P (36% identity) | S.Pin2838ORF12010P | |
| 12010 | M | M.Pin2734I (97% identity) | M.Pin2838ORF12010P | |
| 12015 | nicotinamidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 55 | 80 aa hypothetical protein | |||
| 60 | M | M.Pin2833ORF9525P (96% identity) | M.Pin2838ORF60P | |
| 65 | thymidylate synthase | |||
| 85 | ATP-binding protein | |||
| 90 | M | M.Tfo2417DndEP (97% identity) | M.Pin2838DndEP | |
| 95 | DNA sulfur modification protein DndD | |||
| 90 | DNA sulfur modification protein DndE | |||
| 95 | M | M.Tfo2417DndDP (99% identity) | M.Pin2838DndDP | |
| 100 | DNA phosphorothioation system sulfurtransferase | |||
| 95 | DNA sulfur modification protein DndD | |||
| 100 | M | M.Pme0695DndCP (97% identity) | M.Pin2838DndCP | |
| 105 | XRE family transcriptional regulator | |||
| 5290 | 293 aa hypothetical protein | |||
| 5295 | R | Pin2033IP (98% identity) | GATC | Pin2838IIP |
| 5300 | M | M.Pin2033I (98% identity) | GATC | M.Pin2838II |
| 5305 | 4-hydroxy-3-methylbut-2-enyl diphosphate | |||
| 8235 | 65 aa hypothetical protein | |||
| 8240 | R | PinWW414ORF9365P (100% identity) | Pin2838ORF8245P | |
| 8245 | M | M.PinWW414ORF9365P (100% identity) | M.Pin2838ORF8245P | |
| 8250 | prolipoprotein diacylglyceryl transferase | |||
| chromosome 2 | ||||
| 11415 | topoisomerase I | |||
| 11420 | M | M.Pme0054ORF8110P (99% identity) | M1.Pin2838ORF11420P | |
| 11425 | R | Pme0054ORF8110P (99% identity) | Pin2838ORF11420P | |
| 11430 | M | M.Pme0054ORF8100P (100% identity) | M2.Pin2838ORF11420P | |
| 11435 | XRE family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 9485 | 71 aa hypothetical protein | |||
| ??? | R | Pin2837McrBP (98% identity) | Pin2838McrBP | |
| 9495 | R | Pin2833McrCP (99% identity) | Pin2838McrCP | |
| 9500 | polyketide cyclase | |||
| 11410 | 146 aa hypothetical protein | |||
| 11415 | R | BboS8MrrP (32% identity) | Pin2838MrrP | |
| 11420 | DNA (cytosine-5-)-methyltransferase | |||