Methylocaldum species 175 |
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Putative Methylocaldum species 175 RM systems
Ref: Varghese,N. and Submissions,S. unpublished
REBASE ref # 24881
Contig set: 5,480,099 bp
GenBank #: FXAM00000000 (NZ_FXAM00000000)
REBASE acronym: Msp175
Org_num: 25895
All begin SAMN02949497_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4850 | Site-specific DNA recombinase | |||
| 4851 | M | M.AspSHORF13005P (81% identity) | M.Msp175ORF4851P | |
| 4852 | S | S1.Aca497ORF5790P (75% identity) | S1.Msp175ORF4851P | |
| 4853 | S | S.NrhOXR85ORF20625P (63% identity) | S2.Msp175ORF4851P | |
| 4854 | R | AspSHORF13005P (80% identity) | Msp175ORF4851P | |
| 4855 | Transposase | |||
| 3948 | tagatose 6-phosphate kinase | |||
| 3950 | R | PspsP16ORF20225P (73% identity) | Msp175ORF3952P | |
| 3951 | GxxExxY protein | |||
| 3952 | M | M.GloIAEORF9900P (85% identity) | M.Msp175ORF3952P | |
| ??? | S | S.BbeWBOS08ORF11225P (44% identity) | S.Msp175ORF3952P | |
| 3954 | 162 aa hypothetical protein | |||
| 3968 | Site-specific DNA recombinase | |||
| 3969 | M | M.MisDPrORF33620P (95% identity) | M.Msp175ORF3969P | |
| 3970 | 90 aa hypothetical protein | |||
| 3971 | mRNA interferase MazF | |||
| 3972 | S | S.AmeTR31ORF2085P (39% identity) | S.Msp175ORF3969P | |
| 3973 | PIN domain-containing protein | |||
| 3974 | 61 aa hypothetical protein | |||
| 3975 | 384 aa hypothetical protein | |||
| 3976 | R | MisDPrORF33620P (79% identity) | Msp175ORF3969P | |
| 3977 | transcription termination factor Rho | |||
| 4641 | 118 aa hypothetical protein | |||
| 4642 | R | MmaA45ORFBP (74% identity) | Msp175ORF4646P | |
| 4643 | ATP-dependent DNA helicase RecG | |||
| 4644 | S | S.McoGP6ORF79P (36% identity) | S.Msp175ORF4646P | |
| 4645 | 74 aa hypothetical protein | |||
| 4646 | M | M.PspsP16ORF24710P (74% identity) | M.Msp175ORF4646P | |
| 4647 | Site-specific recombinase XerD | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4763 | Helix-turn-helix of DDE superfamily | |||
| 4764 | RM | SspF21ORF9165P (50% identity) | Msp175ORF4764P | |
| 4765 | Site-specific DNA recombinase | |||
| 4801 | Twitching motility protein PilT | |||
| ??? | M | M.SvaN76ORF3017P (22% identity) | M.Msp175ORF4802P | |
| 4804 | pseudogene | |||
| 788 | pseudogene | |||
| 790 | V | V.MisDPrORF3370P (94% identity) | V.Msp175ORF791P | |
| 791 | M | M.MisDPrORF3370P (93% identity) | M.Msp175ORF791P | |
| ??? | R | MisDPrORF3370P (89% identity) | Msp175ORF791P | |
| 793 | glutamate dehydrogenase | |||
| 1252 | 250 aa hypothetical protein | |||
| ??? | M | M.MisDPrORF2850P (71% identity) | M.Msp175ORF1253P | |
| 1255 | 156 aa hypothetical protein | |||
| 2510 | 95 aa hypothetical protein | |||
| 2511 | RM | TsyCad16ORFRP (50% identity) | Msp175ORF2511P | |
| 2512 | 74 aa hypothetical protein | |||
| 2534 | Murein L,D-transpeptidase YcbB/YkuD | |||
| 2535 | R | Asp3H11ORF9045P (72% identity) | Msp175ORF2536P | |
| 2536 | M | M.MpsM2ORF4410P (76% identity) | M.Msp175ORF2536P | |
| 2537 | outer membrane protein, multidrug efflux system | |||
| 2976 | Polysaccharide deacetylase | |||
| 2977 | M | M.MisDPrORF24220P (83% identity) | M.Msp175ORF2977P | |
| 2978 | serine/threonine protein phosphatase 1 | |||
| 3440 | Predicted chitinase | |||
| ??? | M | M.MisDPrORF2880P (57% identity) | M.Msp175ORF3441P | |
| 3444 | 114 aa hypothetical protein | |||
| 4377 | Exodeoxyribonuclease III | |||
| 4378 | RM | GloSZORF3686P (52% identity) | Msp175ORF4378P | |
| 4379 | CRISPR-associated protein, TM1812 family | |||