Escherichia coli 2013-6-122E |
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Putative Escherichia coli 2013-6-122E RM systems
Ref: Shridhar,P.B. et al. unpublished
REBASE ref # 24880
Contig set: 5,269,044 bp
GenBank #: NEKN00000000 (NZ_NEKN00000000)
REBASE acronym: Eco122E
Org_num: 25880
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 52 | Uncharacterized protein | |||
| 53 | R | EcoP231ORF1540P (100% identity) | RTCANNNNNNCTC | Eco122EORFIP |
| 55 | S | S.EcoSCU103ORF3030P (100% identity) | RTCANNNNNNCTC | S.Eco122EORFIP |
| 57 | M | M.EcoS40ORF24345P (100% identity) | RTCANNNNNNCTC | M.Eco122EORFIP |
| 60 | Uncharacterized protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | M | DNA replication helicase | M.Eco122EORFHP | |
| 3 | M | M.Eco148BORFMP (100% identity) | M.Eco122EORFMP | |
| 10 | Uncharacterized protein | |||
| 5 | Uncharacterized protein | |||
| 6 | M | M.EcoA1226ORF5545P (48% identity) | M.Eco122EORFGP | |
| 5 | 101 aa hypothetical protein | |||
| 6 | M | M.Eco685AORFLP (100% identity) | M.Eco122EORFKP | |
| 8 | 64 aa hypothetical protein | |||
| 2 | 64 aa hypothetical protein | |||
| 3 | M | Methyltransferase | M.Eco122EORFFP | |
| 7 | LexA DNA binding domain protein | |||
| 10 | M | M.KpnHs33ORF24645P (100% identity) | GATC | M.Eco122EORFEP |
| 13 | Uncharacterized protein YfdN | |||
| 27 | 66 aa hypothetical protein | |||
| 30 | M | M.Eco685AORFJP (100% identity) | M.Eco122EORFLP | |
| 34 | NinB protein | |||
| 68 | replication endonuclease from retron EC67 | |||
| 71 | M | M.Eco685AORFAP (100% identity) | GATC | M.Eco122EORFBP |
| 72 | Phage/conjugal plasmid C-4 type zinc finger protein, TraR family | |||
| 120 | 128 aa hypothetical protein | |||
| 123 | M | M.Sso1099ORF735P (100% identity) | GATC | M.Eco122EORFCP |
| 127 | Regulator | |||
| 133 | Ribulose-phosphate 3-epimerase | |||
| 134 | M | Site-specific DNA-methyltransferase | GATC | M.Eco122EDamP |
| 137 | Cell division protein DamX | |||
| 169 | 65 aa hypothetical protein | |||
| 170 | R | Sso1099IP (100% identity) | CTGCAG | Eco122EORFDP |
| 171 | M | M.Sso1099I (100% identity) | CTGCAG | M.Eco122EORFDP |
| 173 | 95 aa hypothetical protein AU083_gp23 | |||
| 301 | Carboxylate/amino acid/amine transporter | |||
| 302 | V | V.Ecos2020DcmP (100% identity) | V.Eco122EDcmP | |
| 306 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco122EDcmP |
| 308 | HD domain protein | |||
| 602 | 98 aa hypothetical protein | |||
| 604 | M | M.Eco685AORFBP (100% identity) | ATGCAT | M.Eco122EORFAP |
| 605 | periplasmic protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 209 | Uncharacterized protein | |||
| 211 | R | EcoZ151McrCP (100% identity) | Eco122EMcrCP | |
| 212 | R | SflSTLE4McrBP (100% identity) | Eco122EMcrBP | |
| 213 | 83 aa hypothetical protein | |||