Haloferax volcanii DS2 |
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Putative Haloferax volcanii DS2 RM systems
Ref: Hartman,A.L. et al. PLoS ONE 5 (3), E9605 (2010)
REBASE ref # 11634
| Sequence length: | GenBank #: | |
| Chromosome: | 2,847,757 bp | CP001956 (NC_013967) |
| plasmid pHV1: | 85,092 bp | CP001957 (NC_013968) |
| plasmid pHV4: | 635,786 bp | CP001955 (NC_013966) |
REBASE acronym: HvoDS
Org_num: 5891
All begin HVO_, HVO_A, HVO_C
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2268 | TATA-binding transcription initiation factor | |||
| 2269 | R | Hsp32ORF11630P (94% identity) | GCABNNNNNNVTGC | HvoDSIIP |
| 2270 | M | M.HgiARA6ORF11405P (81% identity) | GCABNNNNNNVTGC | M.HvoDSII |
| 2271 | S | S.Mla7289ORF1776P (21% identity) | GCABNNNNNNVTGC | S.HvoDSII |
| 2272 | uncharacterized protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 793 | small CPxCG-related zinc finger protein | |||
| 794 | M | M.HvoM76ORFAP (100% identity) | CTAG | M.HvoDSI |
| 795 | transcription initiation factor TFB | |||
| plasmid pHV1 | ||||
| 39 | ISH3-type transposase ISH51 | |||
| 40 | M | M.Hsa16337ORFKP (56% identity) | GTCGAC | M.HvoDSORF40P |
| 41 | uncharacterized protein | |||
| plasmid pHV4 | ||||
| 78 | helicase, SNF2/RAD54 family, putative | |||
| 79 | RM | HspDT80ORFFP (90% identity) | HvoDSORF79P | |
| 80 | ISH8-type transposase ISHvo12 | |||
| 236 | uncharacterized protein | |||
| 237 | RM | HspAJ67ORF139P (57% identity) | HvoDSORF237P | |
| 238 | ISH5-type transposase ISHvo11 | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 680 | (S)-3-O-geranylgeranylglyceryl phosphate | |||
| 682 | R | Hla5678MrrP (73% identity) | HvoDSMrrP | |
| 681 | DNA topoisomerase 1 | |||
| plasmid pHV4 | ||||
| 73 | uncharacterized protein | |||
| 74 | R | Hsa1McrBP (19% identity) | HvoDSMcrBP | |
| 76 | uncharacterized protein | |||