Halomonas species hl-4 HL-4 |
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Putative Halomonas species hl-4 HL-4 RM systems
Ref: Varghese,N. and Submissions,S. unpublished
REBASE ref # 22454
Complete sequence: 4,238,682 bp
GenBank #: LT907845
REBASE acronym: Hsphl4
Org_num: 25738
All begin SAMN04488142_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2204 | IS1182 family transposase | |||
| 2205 | R | HveP1ORFAP (97% identity) | Hsphl4ORF2206P | |
| 2206 | M | M.HtiBH1ORF319P (92% identity) | M.Hsphl4ORF2206P | |
| 2207 | S | S.MspC1S70ORF230P (63% identity) | S.Hsphl4ORF2206P | |
| 2208 | Reverse transcriptase (RNA-dependent DNA | |||
| 2509 | Protein of unknown function | |||
| 2510 | M | M.Hsp116III (95% identity) | M.Hsphl4ORF2510P | |
| 2511 | S | S.HspN32AORF18120P (58% identity) | S.Hsphl4ORF2510P | |
| 2512 | Subtilase family protein | |||
| 2513 | ATPase family associated with various cellular | |||
| 2514 | R | Hsp116IIIP (93% identity) | Hsphl4ORF2510P | |
| 2515 | 239 aa hypothetical protein | |||
| 3596 | 191 aa hypothetical protein | |||
| 3598 | M | M.HspHL93ORF935P (98% identity) | M.Hsphl4ORF3598P | |
| 3599 | S | S.Psp2300ORF4100P (49% identity) | S.Hsphl4ORF3598P | |
| 3600 | Predicted ABC-type ATPase | |||
| 3601 | 67 aa hypothetical protein | |||
| 3602 | protein of unknown function | |||
| 3603 | 69 aa hypothetical protein | |||
| 3604 | 64 aa hypothetical protein | |||
| 3605 | Protein of unknown function | |||
| 3606 | R | HspHL93ORF935P (97% identity) | Hsphl4ORF3598P | |
| 3607 | cAMP-binding domain of CRP or a regulatory | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19 | 79 aa hypothetical protein | |||
| 20 | M | M.Hhy15725ORF6460P (49% identity) | M.Hsphl4ORF20P | |
| 21 | 104 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3963 | Predicted transcriptional regulator, contains | |||
| 3964 | M | M.HspHL93ORF1314P (100% identity) | M.Hsphl4ORF3964P | |
| 3965 | Uncharacterized protein | |||
| 3966 | 70 aa hypothetical protein | |||
| 3967 | IS66 Orf2 like protein | |||
| 3968 | transposase | |||
| 3969 | R | HspHL93ORF1314P (67% identity) | Hsphl4ORF3964P | |
| 3971 | EamA-like transporter family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 672 | pseudogene | |||
| 673 | R | HspHL93McrB2P (100% identity) | Hsphl4McrBP | |
| 674 | R | HspHL93McrC2P (100% identity) | Hsphl4McrCP | |
| 675 | 414 aa hypothetical protein | |||