Prevotella copri Indica |
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Putative Prevotella copri Indica RM systems
Ref: Das,B. et al. unpublished
REBASE ref # 25660
Contig set: 3,920,563 bp
GenBank #: NMPZ00000000 (NZ_NMPZ00000000)
REBASE acronym: PcoIn
Org_num: 25501
All begin CFT61_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 14000 | riboflavin synthase | |||
| 14005 | S | 222 aa hypothetical protein | S.PcoInORF14005P | |
| 14010 | alpha/beta hydrolase | |||
| 8750 | 108 aa hypothetical protein | |||
| 8755 | R | PcoORF5694P (99% identity) | PcoInORF8760P | |
| 8760 | M | M.PcoORF5694P (99% identity) | M.PcoInORF8760P | |
| 8765 | 386 aa hypothetical protein | |||
| 8770 | S | S2.PcoORF5694P (30% identity) | S.PcoInORF8760P | |
| 1255 | 371 aa hypothetical protein | |||
| 1260 | R | PcoORF4773P (97% identity) | PcoInORF1275P | |
| 1265 | 0 aa hypothetical protein | |||
| 1270 | S | S.Ega163I (39% identity) | S.PcoInORF1275P | |
| 1275 | M | M.PcoORF4773P (92% identity) | M.PcoInORF1275P | |
| 1280 | 166 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3810 | 67 aa hypothetical protein | |||
| 3815 | C | C.Pca1379aIP (65% identity) | C.PcoInORF3820P | |
| 3820 | N-6 DNA methylase | |||
| 3825 | S | S.PinZORFGP (78% identity) | S.PcoInORF3820P | |
| 3830 | ATP-dependent DNA helicase RecG | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15925 | 124 aa hypothetical protein | |||
| 15930 | M | M.FpsCHN46ORF11210P (52% identity) | M.PcoInORF15930P | |
| 15935 | R | PbrTC11ORF12515P (82% identity) | PcoInORF15930P | |
| 15940 | 151 aa hypothetical protein | |||
| 12885 | 81 aa hypothetical protein | |||
| 12890 | R | ScoH2383ORFDP (98% identity) | PcoInORF12895P | |
| 12895 | M | M.ScoH2383ORFDP (98% identity) | M.PcoInORF12895P | |
| 12900 | 60 aa hypothetical protein | |||
| 9615 | MFS transporter | |||
| 9620 | R | PhoHDD12ORF2065P (98% identity) | PcoInORF9625P | |
| 9625 | M | M.ScoH2383ORFFP (70% identity) | M.PcoInORF9625P | |
| 9630 | DEAD/DEAH box helicase | |||
| 9275 | 126 aa hypothetical protein | |||
| 9280 | M | M.Pmi156II (51% identity) | M.PcoInORF9280P | |
| 9285 | R | PcoORF4722P (98% identity) | PcoInORF9280P | |
| 9290 | helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14185 | 62 aa hypothetical protein | |||
| 14190 | R | ScoH2383McrC2P (69% identity) | PcoInMcrC3P | |
| ??? | R | PcoMcrB2P (94% identity) | PcoInMcrB3P | |
| 14200 | 77 aa hypothetical protein | |||
| 14025 | 84 aa hypothetical protein | |||
| 14030 | R | PcoInMcrC4P (100% identity) | PcoInMcrC2P | |
| 14035 | R | PcoInMcrB4P (100% identity) | PcoInMcrB2P | |
| 14040 | 528 aa hypothetical protein | |||
| 14025 | 84 aa hypothetical protein | |||
| 14030 | R | PcoInMcrC2P (100% identity) | PcoInMcrC4P | |
| 14035 | R | PcoInMcrB2P (100% identity) | PcoInMcrB4P | |
| 14040 | 528 aa hypothetical protein | |||
| 10850 | hypothetical protein | |||
| 10855 | R | Pco18205McrB4P (62% identity) | PcoInMcrBP | |
| 10860 | R | Pco18205McrC4P (88% identity) | PcoInMcrCP | |
| 10865 | nucleotidyltransferase | |||