Parabacteroides species CT06 |
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Putative Parabacteroides species CT06 RM systems
Ref: Shin,N.-R. et al. unpublished
REBASE ref # 24839
Complete sequence: 5,372,666 bp
GenBank #: CP022754
REBASE acronym: PspCT06
Org_num: 25279
All begin CI960_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15425 | integrase | |||
| 15430 | S | S1.Fnu048ORFCP (58% identity) | S1.PspCT06ORF15450P | |
| 15435 | S | S1.Pme280ORF4695P (66% identity) | S2.PspCT06ORF15450P | |
| 15440 | death-on-curing protein | |||
| 15445 | DNA-binding protein | |||
| 15450 | M | M.PmeBin215ORFBP (96% identity) | M.PspCT06ORF15450P | |
| 15455 | R | PmeBin215ORFBP (96% identity) | PspCT06ORF15450P | |
| 15460 | C | C.PmeBin215ORFBP (100% identity) | C.PspCT06ORF15450P | |
| 15465 | 259 aa hypothetical protein | |||
| 17095 | 415 aa hypothetical protein | |||
| 17100 | R | PdiC09ORF570P (100% identity) | PspCT06ORF17120P | |
| 17105 | DUF4393 domain-containing protein | |||
| 17110 | DUF4145 domain-containing protein | |||
| 17115 | S | S.PdiC09ORF570P (98% identity) | S.PspCT06ORF17120P | |
| 17120 | M | M.PdiC09ORF570P (100% identity) | M.PspCT06ORF17120P | |
| 17125 | ATP-dependent DNA helicase RecG | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10085 | DNA-binding protein | |||
| 10090 | M | M.PdiPdI (100% identity) | CTGCAG | M.PspCT06I |
| 10095 | R | PdiPdIP (100% identity) | CTGCAG | PspCT06IP |
| 10100 | TIR domain-containing protein | |||
| 10415 | conjugal transfer protein TraO | |||
| 10420 | M | M.PdiPdORF3415P (100% identity) | M.PspCT06ORF10420P | |
| 10425 | DUF3872 domain-containing protein | |||
| 13625 | 241 aa hypothetical protein | |||
| 13630 | M | M.PvuC06ORF1788P (100% identity) | M.PspCT06ORF13630P | |
| 13635 | DUF5045 domain-containing protein | |||
| 15165 | 125 aa hypothetical protein | |||
| 15170 | M | M.Bfr17BORF19915P (48% identity) | M.PspCT06ORF15170P | |
| 15175 | DNA cytosine methyltransferase | |||
| 15500 | mobilization protein | |||
| ??? | M | M.Pdi574ORF17720P (98% identity) | M.PspCT06ORF15505P | |
| 15515 | 2,5-diketo-D-gluconic acid reductase | |||
| 19790 | 1220 aa hypothetical protein | |||
| 19795 | M | M.PspAT13II (100% identity) | CCWGG | M.PspCT06II |
| 19800 | transcriptional regulator | |||
| 19805 | R | PspAT13IIP (100% identity) | CCWGG | PspCT06IIP |
| 19810 | glycoside hydrolase xylanase | |||
| 21165 | transaldolase | |||
| 21170 | R | PmeBin29ORFAP (100% identity) | CGCG | PspCT06ORF21175P |
| 21175 | M | M.Pdi549ORF6475P (100% identity) | CGCG | M.PspCT06ORF21175P |
| 21180 | 208 aa hypothetical protein | |||
| 22885 | 552 aa hypothetical protein | |||
| 22890 | M | M.Pdi549ORF8495P (100% identity) | M.PspCT06ORF22890P | |
| 22895 | R | Pdi549ORF8495P (100% identity) | PspCT06ORF22890P | |
| 22900 | sodium:proton antiporter | |||