Helicobacter pylori SV449_1 |
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Putative Helicobacter pylori SV449_1 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,643,541 bp
GenBank #: MTWT00000000 (NZ_MTWT00000000)
REBASE acronym: Hpy449
Org_num: 24026
All begin BZK17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4430 | 631 aa hypothetical protein | |||
| 4435 | R | HpyME10ORF2135P (90% identity) | CCANNNNNNTC | Hpy449ORF4440P |
| 4440 | M | M.HpyH007ORF2125P (97% identity) | CCANNNNNNTC | M.Hpy449ORF4440P |
| 4445 | S | S.HpyPO104ORF2550P (98% identity) | CCANNNNNNTC | S.Hpy449ORF4440P |
| 4455 | RNA degradosome polyphosphate kinase | |||
| 3480 | DNA polymerase I | |||
| 3485 | S | S.HpyME10XII (87% identity) | S.Hpy449ORF3485P | |
| ??? | Cytosine-specific methyltransferase | |||
| 2665 | type I restriction endonuclease | |||
| 2670 | M | M.HpyAL5VI (96% identity) | CCANNNNNNTC | M.Hpy449ORF2670P |
| 2675 | S | S.HpyCOL302II (95% identity) | CCANNNNNNTC | S.Hpy449ORF2670P |
| 2680 | R | Hpy135ORF4200P (82% identity) | CCANNNNNNTC | Hpy449ORF2670P |
| 2685 | hydroxyethylthiazole kinase | |||
| 3800 | cag pathogenicity island protein | |||
| 3805 | S | S.HpySP506XII (96% identity) | S.Hpy449ORF3810P | |
| 3810 | M | M.HpyAL10ORF7335P (96% identity) | M.Hpy449ORF3810P | |
| 3815 | R | HpyNCI22ORFPP (94% identity) | Hpy449ORF3810P | |
| 3820 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6960 | M | M.HpyJSHR6ORF10420P (99% identity) | M.Hpy449ORF6960P | |
| 6965 | elongation factor 4 | |||
| 7910 | catalase | |||
| 7915 | R | Hpy5009ORF7990P (100% identity) | ACGT | Hpy449ORF7920P |
| 7920 | M | M.HpyCOL113ORF2285P (100% identity) | ACGT | M.Hpy449ORF7920P |
| 7925 | restriction endonuclease | |||
| 6835 | 144 aa hypothetical protein | |||
| 6840 | M | M.HpyPE101XV (97% identity) | M.Hpy449ORF6840P | |
| 6845 | flagellar biosynthesis protein FlgM | |||
| 7920 | DNA (cytosine-5-)-methyltransferase | |||
| 7925 | R | Hpy397ORF7625P (99% identity) | ACNGT | Hpy449ORF7930P |
| 7930 | M | M.Hpy397ORF7625P (100% identity) | ACNGT | M.Hpy449ORF7930P |
| 7935 | GTP-binding protein TypA | |||
| 7945 | 264 aa hypothetical protein | |||
| 7950 | M | M.HpyPE113III (98% identity) | ATTAAT | M.Hpy449ORF7950P |
| 7490 | methyltransferase | |||
| 7495 | M | M.HpyPE116XI (100% identity) | TCNNGA | M.Hpy449ORF7495P |
| 7500 | R | Hpy45kORF1325P (98% identity) | TCNNGA | Hpy449ORF7495P |
| 7505 | Laminin subunit alpha-2 precursor | |||
| 300 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 305 | M | M.HpyPO09IV (98% identity) | GTAC | M.Hpy449ORF305P |
| 310 | R | Hpy180ORF2515P (98% identity) | GTAC | Hpy449ORF305P |
| 315 | 403 aa hypothetical protein | |||
| ??? | hypothetical protein | |||
| 4975 | M | M.HpyGE6VI (99% identity) | M1.Hpy449ORF4975P | |
| 4980 | M | M1.Hpy23AORFPP (97% identity) | GAAGA | M2.Hpy449ORF4975P |
| 4985 | R | HpyPO12VIIP (96% identity) | GAAGA | Hpy449ORF4975P |
| 4990 | two-component system response regulator | |||
| 2320 | ATP-dependent DNA helicase | |||
| 2325 | M | M.HpyGH9XII (97% identity) | GTNNAC | M.Hpy449ORF2325P |
| 2330 | R | HpySP610VIIP (99% identity) | GTNNAC | Hpy449ORF2325P |
| 2335 | flagellar hook protein FlgE | |||
| 7695 | acetone carboxylase subunit gamma | |||
| 7700 | R | HpyNG19ORF4430P (98% identity) | CCNNGG | Hpy449ORF7705P |
| 7705 | M | M.HpyPOR114IV (99% identity) | CCNNGG | M.Hpy449ORF7705P |
| 7710 | 3-5 exonuclease | |||
| 4165 | hydrolase | |||
| 4170 | M | M.HpyNCI40I (93% identity) | CATG | M.Hpy449ORF4170P |
| 4175 | IceA2 protein | |||
| 3485 | type I restriction endonuclease | |||
| ??? | M | M.HpyL006ORF7285P (100% identity) | M.Hpy449ORF3490P | |
| 3495 | R | HpysHP34ORF1435P (100% identity) | Hpy449ORF3490P | |
| 3500 | nuclease | |||
| 1540 | alpha-1,2-fucosyltransferase | |||
| 1545 | M | M.HpyKG2IX (96% identity) | GATC | M.Hpy449ORF1545P |
| 1550 | 339 aa hypothetical protein | |||
| 5040 | nicotinate-nucleotide diphosphorylase | |||
| 5045 | RM | HpyGT7ORF6465P (92% identity) | Hpy449ORF5045P | |
| 5050 | DNA methyltransferase | |||
| 170 | 70 aa hypothetical protein | |||
| 175 | M | M.HpyKG2XIV (99% identity) | TCNGA | M.Hpy449ORF175P |
| 180 | R | HpySWT04IXP (67% identity) | TCNGA | Hpy449ORF175P |
| 185 | purine-nucleoside phosphorylase | |||
| 5045 | DNA methyltransferase | |||
| 5050 | M | M.HpyCOL118VIII (99% identity) | GANTC | M.Hpy449ORF5050P |
| 5055 | R | HpyU302VIP (99% identity) | GANTC | Hpy449ORF5050P |
| 5060 | peptidase S41 | |||
| 7805 | 828 aa hypothetical protein | |||
| 7810 | RM | HpyU001ORF3365P (89% identity) | Hpy449ORF7810P | |
| 7815 | glycerol-3-phosphate dehydrogenase | |||
| 6100 | ATP-dependent chaperone ClpB | |||
| 6105 | M | M.HpySP409III (100% identity) | CCGG | M.Hpy449ORF6105P |
| 6110 | R | Hpy5108ORF7845P (98% identity) | CCGG | Hpy449ORF6105P |
| 6115 | 80 aa hypothetical protein | |||
| 3630 | permease | |||
| 3635 | M | M1.HpyPR08III (100% identity) | CCATC | M1.Hpy449ORF3635P |
| 3640 | M | M1.HpyPO02VII (99% identity) | CCATC | M2.Hpy449ORF3635P |
| 3645 | R | Hpy94ORF7885P (97% identity) | CCATC | Hpy449ORF3635P |
| 3650 | 388 aa hypothetical protein | |||
| 6115 | 80 aa hypothetical protein | |||
| 6120 | M | M.HpyR3cORF6235P (98% identity) | TCGA | M.Hpy449ORF6120P |
| 6125 | exodeoxyribonuclease VII large subunit | |||
| 1745 | sodium/proline symporter | |||
| 1750 | M | M.HpyCOL119VI (98% identity) | CCTTC | M.Hpy449ORF1750P |
| 1755 | R | HpyPE18VP (95% identity) | CCTTC | Hpy449ORF1750P |
| 1760 | restriction endonuclease | |||
| 1755 | restriction endonuclease | |||
| 1760 | R | HpySP317IIIP (96% identity) | CCTC | Hpy449ORF1765P |
| 1765 | M | M2.HpyU001IVP (98% identity) | CCTC | M2.Hpy449ORF1765P |
| 1770 | M | M1.HpyP104V (99% identity) | CCTC | M1.Hpy449ORF1765P |
| 1775 | agmatine deiminase | |||
| 3720 | 69 aa hypothetical protein | |||
| 3725 | RM | HpySWT08ORF7330P (92% identity) | Hpy449ORF3725P | |
| 3730 | 34 aa hypothetical protein | |||
| 3895 | 68 aa hypothetical protein | |||
| 3900 | M | M.HpyC026VI (100% identity) | TGCA | M.Hpy449ORF3900P |
| 3905 | R | HpyCOL114XIIIP (94% identity) | TGCA | Hpy449ORF3900P |
| 3910 | translation elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4885 | biotin synthase BioB | |||
| 4890 | R | HpyPO13XIIP (90% identity) | Hpy449ORF4895P | |
| 4895 | M | M.Hpy5009ORF7100P (94% identity) | M.Hpy449ORF4895P | |
| 4900 | endonuclease | |||
| 4955 | rod shape-determining protein MreC | |||
| 4960 | R | Hpy017XIIIP (93% identity) | Hpy449ORF4965P | |
| ??? | M | M.HpyKH19ORFSP (93% identity) | M.Hpy449ORF4965P | |
| 4975 | restriction endonuclease subunit M | |||
| 3730 | 34 aa hypothetical protein | |||
| 3735 | R | HpyCOL104ORF7340P (95% identity) | Hpy449ORF3740P | |
| 3740 | M | M.HpyI003ORF470P (96% identity) | M.Hpy449ORF3740P | |
| 3745 | ATP-dependent DNA helicase RecG | |||