Helicobacter pylori SV376_1 |
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Putative Helicobacter pylori SV376_1 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,677,789 bp
GenBank #: MTWR00000000 (NZ_MTWR00000000)
REBASE acronym: Hpy376
Org_num: 24023
All begin BZK24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8330 | S | 235 aa hypothetical protein | S.Hpy376ORF8330P | |
| 5775 | 202 aa hypothetical protein | |||
| 5780 | R | HpyCOL307ORF7355P (55% identity) | Hpy376ORF5785P | |
| 5785 | M | M.Hpy5016ORF3855P (96% identity) | M.Hpy376ORF5785P | |
| 5790 | S | S.HpyNCI26ORFJP (99% identity) | S.Hpy376ORF5785P | |
| 5795 | 61 aa hypothetical protein | |||
| 8095 | hydroxyethylthiazole kinase | |||
| ??? | R | Type I restriction enzyme R protein | Hpy376ORF8100P | |
| 1675 | type I restriction endonuclease | |||
| 1680 | M | M.HpyCA12XIV (93% identity) | M.Hpy376ORF1680P | |
| 4620 | 631 aa hypothetical protein | |||
| 4625 | R | HpyI019ORF2170P (90% identity) | Hpy376ORF4630P | |
| 4630 | M | M.HpySP02ORF2230P (34% identity) | M.Hpy376ORF4630P | |
| 6095 | cadmium-translocating P-type ATPase | |||
| 6100 | S | S.HpyR09ORF3925P (96% identity) | S.Hpy376ORF6100P | |
| 6105 | R | type I restriction endonuclease subunit R | Hpy376ORF6100P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1455 | R | HpySP14IP (67% identity) | Hpy376ORF1455P | |
| 1460 | serine O-acetyltransferase | |||
| 6870 | DNA gyrase subunit B | |||
| 6875 | M | M.HpyCOL206VIII (100% identity) | GTAC | M.Hpy376ORF6875P |
| 6880 | R | HpyPE114XIIP (97% identity) | GTAC | Hpy376ORF6875P |
| 6885 | 406 aa hypothetical protein | |||
| 7915 | DNA methyltransferase | |||
| ??? | hypothetical protein | |||
| 8315 | M | SAM-dependent methyltransferase | M.Hpy376ORF8315P | |
| 8320 | ATP-dependent DNA helicase | |||
| 8425 | R | HNH endonuclease | Hpy376ORF8430P | |
| 8430 | M | M.HpyCOL207I (97% identity) | CATG | M.Hpy376ORF8430P |
| 8460 | M | M.HpyPE116VIII (50% identity) | M.Hpy376ORF8460P | |
| 645 | RM | HpyPO12ORF7115P (76% identity) | Hpy376ORF645P | |
| 650 | 190 aa hypothetical protein | |||
| 4835 | M | M.HpySP312VI (26% identity) | M.Hpy376ORF4835P | |
| 4840 | R | HpyMT5118ORF270P (98% identity) | Hpy376ORF4835P | |
| 4845 | restriction endonuclease | |||
| ??? | R | HpyU434IXP (96% identity) | Hpy376ORF7745P | |
| 7750 | flagellar hook protein FlgE | |||
| 3235 | ribonuclease HII | |||
| 3240 | M | HpyCOL211ORF6620P (72% identity) | M.Hpy376ORF3240P | |
| 3245 | nicotinate-nucleotide diphosphorylase | |||
| 6350 | glycosyltransferase 9 family protein | |||
| ??? | M | M.HpyNCI26ORFCP (99% identity) | M.Hpy376ORF6355P | |
| ??? | R | HpyNCI26ORFCP (100% identity) | Hpy376ORF6355P | |
| 6370 | glycosyltransferase 9 family protein | |||
| 4840 | restriction endonuclease | |||
| 4845 | R | HpySP611VIIP (99% identity) | CCTC | Hpy376ORF4855P |
| 4850 | M | M2.HpyME01VII (99% identity) | CCTC | M2.Hpy376ORF4855P |
| 4855 | M | M1.HpyLI31V (98% identity) | CCTC | M1.Hpy376ORF4855P |
| 4860 | agmatine deiminase | |||
| 5885 | catalase | |||
| 5890 | R | HpyLIM8ORF2210P (100% identity) | ACGT | Hpy376ORF5895P |
| 5895 | M | M.HpyCOL113ORF2285P (98% identity) | ACGT | M.Hpy376ORF5895P |
| 5900 | GTP-binding protein TypA | |||
| 7810 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7820 | R | HpyMT5118IVP (99% identity) | GATC | Hpy376ORF7825P |
| 7825 | M | M.HpyCOL209VIII (97% identity) | GATC | M.Hpy376ORF7825P |
| 7830 | alpha-1,2-fucosyltransferase | |||
| 5905 | glycosyltransferase 9 family protein | |||
| 5910 | M | M.HpySP406III (96% identity) | ATTAAT | M.Hpy376ORF5910P |
| 5915 | 366 aa hypothetical protein | |||
| 6855 | peptidase S41 | |||
| 6860 | R | HpyU005ORF6250P (97% identity) | Hpy376ORF6865P | |
| 6865 | M | M.HpyMT5118III (66% identity) | M.Hpy376ORF6865P | |
| 4150 | 256 aa hypothetical protein | |||
| 4155 | M | M1.HpyU303ORF895P (100% identity) | M.Hpy376ORF4155P | |
| 4160 | elongation factor P | |||
| 7190 | 0 aa hypothetical protein | |||
| 7195 | RM | HpySP04ORF3230P (78% identity) | Hpy376ORF7195P | |
| 7200 | GTPase | |||
| 4755 | ATP-dependent chaperone ClpB | |||
| 4760 | M | M.HpyU004IV (100% identity) | CCGG | M.Hpy376ORF4760P |
| 4765 | R | HpyU001ORF1295P (83% identity) | Hpy376ORF4760P | |
| 4770 | 40 aa hypothetical protein | |||
| 390 | site-specific DNA-methyltransferase | |||
| 395 | M | M1.HpyU303VI (100% identity) | GAAGA | M1.Hpy376ORF395P |
| 400 | M | Hpy5056ORF8915P (40% identity) | GAAGA | M2.Hpy376ORF395P |
| 405 | R | HpyU428VIP (98% identity) | GAAGA | Hpy376ORF395P |
| 410 | two-component system response regulator | |||
| 4045 | flagellar biosynthesis protein FlgM | |||
| 4050 | M | M.HpyCOL301XIV (95% identity) | M.Hpy376ORF4050P | |
| 4055 | 144 aa hypothetical protein | |||
| 5865 | DEAD/DEAH box helicase | |||
| 5870 | RM | restriction endonuclease | Hpy376ORF5870P | |
| 1815 | Laminin subunit alpha-2 precursor | |||
| 1820 | R | Hpy180ORF5345P (98% identity) | Hpy376ORF1825P | |
| 1825 | M | M.HpyI005XI (98% identity) | TCNNGA | M.Hpy376ORF1825P |
| 1830 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3735 | 68 aa hypothetical protein | |||
| 3740 | M | M.HpyNCI26ORFQP (100% identity) | M.Hpy376ORF3740P | |
| 3745 | 196 aa hypothetical protein | |||
| 3510 | elongation factor 4 | |||
| 3515 | M | M.Hpybs1ORFFP (85% identity) | M.Hpy376ORF3515P | |
| 3520 | 92 aa hypothetical protein | |||
| 5350 | exodeoxyribonuclease VII large subunit | |||
| 5355 | M | M.HpyMT5119XI (98% identity) | TCGA | M.Hpy376ORF5355P |
| 5360 | 0 aa hypothetical protein | |||
| 865 | amidophosphoribosyltransferase | |||
| 870 | RM | HpyMT5136ORF7120P (97% identity) | Hpy376ORF870P | |
| 875 | S | S.HpyC82XII (67% identity) | S.Hpy376ORF870P | |
| 880 | DNA polymerase I | |||
| 925 | addiction module antidote protein | |||
| 930 | M | M2.Hpy3ORF14470P (99% identity) | M1.Hpy376ORF930P | |
| 935 | M | M2.HpyCOL318ORF7000P (99% identity) | M2.Hpy376ORF930P | |
| 940 | R | Hpyfe56ORF355P (99% identity) | Hpy376ORF930P | |
| 945 | cytochrome C biogenesis protein CcsA | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 320 | M | site-specific DNA-methyltransferase | M.Hpy376ORF320P | |
| 325 | endonuclease | |||
| 6580 | R | HpyME09ORF335P (88% identity) | Hpy376ORF6585P | |
| 6585 | M | M.Hpy478AORFKP (58% identity) | M.Hpy376ORF6585P | |
| 380 | rod shape-determining protein MreC | |||
| 385 | R | HpySP324XIIP (94% identity) | Hpy376ORF390P | |
| 390 | M | M.HpyC021XVI (94% identity) | M.Hpy376ORF390P | |
| 395 | site-specific DNA-methyltransferase | |||
| 5855 | ATP-dependent DNA helicase RecG | |||
| 5860 | M | M.HpyCOL309ORF7135P (93% identity) | M.Hpy376ORF5860P | |
| 5865 | R | HpyME04ORF6975P (94% identity) | Hpy376ORF5860P | |
| 5870 | restriction endonuclease | |||