Helicobacter pylori PZ5016_3A3 |
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Putative Helicobacter pylori PZ5016_3A3 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,618,060 bp
GenBank #: MTWL00000000 (NZ_MTWL00000000)
REBASE acronym: Hpy5016
Org_num: 24017
All begin BZK28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 305 | S | restriction endonuclease subunit S | S.Hpy5016ORF310P | |
| 310 | M | M.HpyCOL205XIV (100% identity) | M.Hpy5016ORF310P | |
| 315 | cadmium-translocating P-type ATPase | |||
| 3300 | S | S.HpySP506XII (46% identity) | S.Hpy5016ORF3300P | |
| 3305 | 499 aa hypothetical protein | |||
| 3845 | metal-dependent hydrolase | |||
| 3850 | R | HpyCO2VIIP (94% identity) | Hpy5016ORF3855P | |
| 3855 | M | M.Hpy376ORF5785P (96% identity) | M.Hpy5016ORF3855P | |
| 3860 | S | S.HpyMT5114XIII (43% identity) | S.Hpy5016ORF3855P | |
| 590 | hydroxyethylthiazole kinase | |||
| 595 | R | HpyMT5135ORF4055P (96% identity) | Hpy5016ORF605P | |
| 600 | S | S.HpyDO10ORF2670P (92% identity) | S.Hpy5016ORF605P | |
| 605 | M | M.HpySWT03XIV (95% identity) | M.Hpy5016ORF605P | |
| 610 | DNA (cytosine-5-)-methyltransferase | |||
| 4940 | 0 aa hypothetical protein | |||
| 4945 | S | S.HpyMT5136ORF2140P (99% identity) | S.Hpy5016ORF4950P | |
| ??? | M | M.HpyMT5136ORF2140P (99% identity) | M.Hpy5016ORF4950P | |
| 4960 | R | HpyLIM10ORF2280P (92% identity) | Hpy5016ORF4950P | |
| 4965 | 631 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7765 | M | M.HpyMT5136II (99% identity) | ATTAAT | M.Hpy5016ORF7765P |
| 7770 | glycosyltransferase 9 family protein | |||
| 7005 | 0 aa hypothetical protein | |||
| 7010 | M | M.HpyMT5136X (100% identity) | TCNGA | M.Hpy5016ORF7010P |
| ??? | R | HpyU408XP (100% identity) | TCNGA | Hpy5016ORF7010P |
| 7020 | purine-nucleoside phosphorylase | |||
| 6345 | 179 aa hypothetical protein | |||
| 6350 | RM | HpyCO3ORF6770P (93% identity) | Hpy5016ORF6350P | |
| 6355 | 34 aa hypothetical protein | |||
| 7775 | GTP-binding protein TypA | |||
| 7780 | M | M.HpyMT5136ORF2235P (99% identity) | M.Hpy5016ORF7780P | |
| 7785 | R | type II restriction endonuclease | Hpy5016ORF7780P | |
| 7790 | DNA (cytosine-5-)-methyltransferase | |||
| 6880 | 144 aa hypothetical protein | |||
| 6885 | M | M.HpyMT5136ORF5445P (99% identity) | M.Hpy5016ORF6885P | |
| 6890 | flagellar biosynthesis protein FlgM | |||
| 7785 | type II restriction endonuclease | |||
| 7790 | M | M.HpyMT5136ORF2245P (99% identity) | M.Hpy5016ORF7790P | |
| 7795 | catalase | |||
| 3670 | peptidase S41 | |||
| 3675 | R | HpyNCI23IVP (97% identity) | GANTC | Hpy5016ORF3680P |
| 3680 | M | M.HpyCOL119VIII (100% identity) | GANTC | M.Hpy5016ORF3680P |
| 3685 | DNA methyltransferase | |||
| 3680 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyUM037ORF1650P (85% identity) | Hpy5016ORF3690P | |
| 3695 | nicotinate-nucleotide diphosphorylase | |||
| 2060 | flagellar hook protein FlgE | |||
| 2065 | R | HpyI017XP (96% identity) | GTNNAC | Hpy5016ORF2070P |
| 2070 | M | M.HpyME44XI (96% identity) | GTNNAC | M.Hpy5016ORF2070P |
| 2075 | ATP-dependent DNA helicase | |||
| 7140 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 7145 | M | M.HpyCOL205VIII (99% identity) | GTAC | M.Hpy5016ORF7145P |
| ??? | R | HpyMT5136VIIP (95% identity) | Hpy5016ORF7145P | |
| 7160 | 406 aa hypothetical protein | |||
| 6505 | glycerol-3-phosphate dehydrogenase | |||
| 6510 | RM | HpySP04ORF3230P (89% identity) | Hpy5016ORF6510P | |
| 6515 | 502 aa hypothetical protein | |||
| 3750 | anthranilate synthase component I | |||
| 3755 | R | HpyZ011XIP (94% identity) | TGCA | Hpy5016ORF3760P |
| 3760 | M | M.HpyU105XI (99% identity) | TGCA | M.Hpy5016ORF3760P |
| 3765 | 68 aa hypothetical protein | |||
| 925 | alpha-1,2-fucosyltransferase | |||
| 930 | M | M.HpyKE21ORF2850P (97% identity) | M.Hpy5016ORF930P | |
| ??? | R | HpyPR08XP (93% identity) | Hpy5016ORF930P | |
| 945 | malonyl CoA-acyl carrier protein transacylase | |||
| 2815 | transcriptional regulator | |||
| 2820 | M | M2.HpySP606IX (99% identity) | M1.Hpy5016ORF2820P | |
| 2825 | M | M2.HpyU305X (91% identity) | M2.Hpy5016ORF2820P | |
| 2830 | R | HpyJO5XIP (100% identity) | Hpy5016ORF2820P | |
| 2835 | amidophosphoribosyltransferase | |||
| 1925 | Laminin subunit alpha-2 precursor | |||
| 1930 | R | HpyLI21XIP (98% identity) | Hpy5016ORF1935P | |
| 1935 | M | M.HpyCOL119XI (99% identity) | TCNNGA | M.Hpy5016ORF1935P |
| 1940 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4030 | exodeoxyribonuclease VII large subunit | |||
| 4035 | M | M.HpyMT5124X (98% identity) | TCGA | M.Hpy5016ORF4035P |
| 4040 | 141 aa hypothetical protein | |||
| 7455 | 94 aa hypothetical protein | |||
| 7460 | M | M.HpyU437I (98% identity) | CATG | M.Hpy5016ORF7460P |
| 7465 | hydrolase | |||
| 4040 | 141 aa hypothetical protein | |||
| 4045 | R | HpyMT5136IIIP (85% identity) | Hpy5016ORF4050P | |
| 4050 | M | M.Hpy49503ORF13290P (99% identity) | CCGG | M.Hpy5016ORF4050P |
| 4055 | ATP-dependent chaperone ClpB | |||
| 6590 | 3-5 exonuclease | |||
| 6595 | M | M.HpyPE106ORF3305P (99% identity) | M.Hpy5016ORF6595P | |
| ??? | R | HpyMTT60ORFNP (96% identity) | Hpy5016ORF6595P | |
| 6610 | acetone carboxylase subunit gamma | |||
| 605 | type I restriction-modification system subunit | |||
| 610 | M | M.HpyU420ORF3930P (100% identity) | M.Hpy5016ORF610P | |
| 615 | R | HpySP309ORF2160P (99% identity) | Hpy5016ORF610P | |
| 620 | phosphatase PAP2 family protein | |||
| 2965 | restriction endonuclease | |||
| ??? | R | HpyCOL208IVP (88% identity) | Hpy5016ORF2970P | |
| 2975 | 388 aa hypothetical protein | |||
| 1140 | sodium/proline symporter | |||
| 1145 | R | HpyMT5136IVP (100% identity) | Hpy5016ORF1150P | |
| 1150 | DNA (cytosine-5-)-methyltransferase | |||
| 1155 | M | M2.HpyMT5136IVP (100% identity) | CCTC | M2.Hpy5016ORF1150P |
| 1160 | agmatine deiminase | |||
| 1700 | glycosyl transferase 8 family protein | |||
| 1705 | M | M.HpyU406ORF7470P (82% identity) | M.Hpy5016ORF1705P | |
| 1710 | restriction endonuclease subunit M | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6355 | 34 aa hypothetical protein | |||
| 6360 | R | HpyBR20ORF6275P (96% identity) | Hpy5016ORF6365P | |
| 6365 | M | M.HpyCO5ORF6720P (97% identity) | M.Hpy5016ORF6365P | |
| 6370 | ATP-dependent DNA helicase RecG | |||
| 7730 | 81 aa hypothetical protein | |||
| 7735 | R | HpyU432ORF7435P (89% identity) | Hpy5016ORF7735P | |
| 1705 | restriction endonuclease subunit M | |||
| ??? | M | M.HpyCOL2ORF6375P (93% identity) | M.Hpy5016ORF1710P | |
| 1720 | R | HpyU305XVIP (94% identity) | Hpy5016ORF1710P | |
| 1725 | rod shape-determining protein MreC | |||